Experiment: m.b. Nickel (II) chloride 0.625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01790 and PGA1_262p01800 overlap by 4 nucleotides PGA1_262p01800 and PGA1_262p01810 are separated by 14 nucleotides PGA1_262p01810 and PGA1_262p01820 overlap by 4 nucleotides
PGA1_262p01790: PGA1_262p01790 - aldehyde dehydrogenase, at 196,111 to 197,562
_262p01790
PGA1_262p01800: PGA1_262p01800 - putative membrane dipeptidase, at 197,559 to 198,536
_262p01800
PGA1_262p01810: PGA1_262p01810 - hypothetical protein, at 198,551 to 200,254
_262p01810
PGA1_262p01820: PGA1_262p01820 - Protein of unknown function (DUF3726)., at 200,251 to 200,901
_262p01820
Position (kb) 198
199
200
201 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 197.576 kb on + strand at 197.730 kb on - strand, within PGA1_262p01800 at 197.730 kb on - strand, within PGA1_262p01800 at 197.813 kb on + strand, within PGA1_262p01800 at 198.074 kb on + strand, within PGA1_262p01800 at 198.074 kb on + strand, within PGA1_262p01800 at 198.082 kb on - strand, within PGA1_262p01800 at 198.089 kb on - strand, within PGA1_262p01800 at 198.240 kb on + strand, within PGA1_262p01800 at 198.240 kb on + strand, within PGA1_262p01800 at 198.240 kb on + strand, within PGA1_262p01800 at 198.274 kb on + strand, within PGA1_262p01800 at 198.279 kb on + strand, within PGA1_262p01800 at 198.362 kb on - strand, within PGA1_262p01800 at 198.448 kb on + strand at 198.456 kb on - strand at 198.470 kb on + strand at 198.479 kb on + strand at 198.479 kb on + strand at 198.525 kb on + strand at 198.555 kb on - strand at 198.604 kb on + strand at 198.612 kb on - strand at 198.639 kb on + strand at 198.652 kb on - strand at 198.762 kb on + strand, within PGA1_262p01810 at 198.770 kb on - strand, within PGA1_262p01810 at 198.770 kb on - strand, within PGA1_262p01810 at 198.777 kb on + strand, within PGA1_262p01810 at 198.850 kb on - strand, within PGA1_262p01810 at 198.905 kb on + strand, within PGA1_262p01810 at 198.922 kb on + strand, within PGA1_262p01810 at 199.230 kb on - strand, within PGA1_262p01810 at 199.280 kb on - strand, within PGA1_262p01810 at 199.280 kb on - strand, within PGA1_262p01810 at 199.280 kb on - strand, within PGA1_262p01810 at 199.440 kb on - strand, within PGA1_262p01810 at 199.475 kb on + strand, within PGA1_262p01810 at 199.478 kb on - strand, within PGA1_262p01810 at 199.484 kb on - strand, within PGA1_262p01810 at 199.488 kb on - strand, within PGA1_262p01810 at 199.541 kb on + strand, within PGA1_262p01810 at 199.541 kb on + strand, within PGA1_262p01810 at 199.544 kb on - strand, within PGA1_262p01810 at 199.586 kb on - strand, within PGA1_262p01810 at 199.791 kb on + strand, within PGA1_262p01810 at 199.962 kb on + strand, within PGA1_262p01810 at 200.067 kb on + strand, within PGA1_262p01810 at 200.067 kb on + strand, within PGA1_262p01810 at 200.075 kb on - strand, within PGA1_262p01810 at 200.075 kb on - strand, within PGA1_262p01810 at 200.075 kb on - strand, within PGA1_262p01810 at 200.075 kb on - strand, within PGA1_262p01810 at 200.075 kb on - strand, within PGA1_262p01810 at 200.075 kb on - strand, within PGA1_262p01810 at 200.081 kb on + strand, within PGA1_262p01810 at 200.185 kb on + strand at 200.308 kb on + strand at 200.313 kb on + strand at 200.321 kb on - strand, within PGA1_262p01820 at 200.418 kb on + strand, within PGA1_262p01820 at 200.433 kb on + strand, within PGA1_262p01820 at 200.737 kb on - strand, within PGA1_262p01820 at 200.761 kb on + strand, within PGA1_262p01820 at 200.761 kb on + strand, within PGA1_262p01820 at 200.773 kb on + strand, within PGA1_262p01820 at 200.786 kb on - strand, within PGA1_262p01820 at 200.872 kb on - strand at 200.905 kb on + strand at 200.905 kb on + strand at 200.905 kb on + strand at 200.913 kb on - strand at 200.918 kb on - strand at 200.923 kb on + strand at 200.977 kb on + strand at 200.977 kb on + strand at 200.977 kb on + strand at 200.985 kb on - strand at 200.985 kb on - strand at 200.985 kb on - strand at 200.992 kb on + strand at 200.999 kb on + strand at 201.073 kb on + strand at 201.074 kb on - strand at 201.074 kb on - strand at 201.081 kb on - strand at 201.082 kb on - strand at 201.112 kb on - strand at 201.135 kb on + strand at 201.181 kb on + strand at 201.254 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 0.625 mM remove 197,576 + +0.3 197,730 - PGA1_262p01800 0.17 -1.5 197,730 - PGA1_262p01800 0.17 +0.3 197,813 + PGA1_262p01800 0.26 +1.0 198,074 + PGA1_262p01800 0.53 +0.5 198,074 + PGA1_262p01800 0.53 -0.2 198,082 - PGA1_262p01800 0.53 +0.6 198,089 - PGA1_262p01800 0.54 -0.5 198,240 + PGA1_262p01800 0.70 -0.9 198,240 + PGA1_262p01800 0.70 +0.5 198,240 + PGA1_262p01800 0.70 +0.7 198,274 + PGA1_262p01800 0.73 -1.6 198,279 + PGA1_262p01800 0.74 -0.5 198,362 - PGA1_262p01800 0.82 +0.8 198,448 + +0.2 198,456 - -0.8 198,470 + +0.4 198,479 + +0.9 198,479 + +0.6 198,525 + +0.9 198,555 - +0.4 198,604 + +1.1 198,612 - +0.6 198,639 + -1.1 198,652 - +0.7 198,762 + PGA1_262p01810 0.12 +0.1 198,770 - PGA1_262p01810 0.13 -0.4 198,770 - PGA1_262p01810 0.13 +0.1 198,777 + PGA1_262p01810 0.13 -0.3 198,850 - PGA1_262p01810 0.18 +1.7 198,905 + PGA1_262p01810 0.21 +1.0 198,922 + PGA1_262p01810 0.22 -0.5 199,230 - PGA1_262p01810 0.40 +0.3 199,280 - PGA1_262p01810 0.43 +0.9 199,280 - PGA1_262p01810 0.43 -0.3 199,280 - PGA1_262p01810 0.43 +0.4 199,440 - PGA1_262p01810 0.52 -0.2 199,475 + PGA1_262p01810 0.54 +0.3 199,478 - PGA1_262p01810 0.54 -0.0 199,484 - PGA1_262p01810 0.55 -0.1 199,488 - PGA1_262p01810 0.55 -0.4 199,541 + PGA1_262p01810 0.58 +0.7 199,541 + PGA1_262p01810 0.58 -0.5 199,544 - PGA1_262p01810 0.58 -1.6 199,586 - PGA1_262p01810 0.61 +0.8 199,791 + PGA1_262p01810 0.73 +1.1 199,962 + PGA1_262p01810 0.83 +1.4 200,067 + PGA1_262p01810 0.89 +0.8 200,067 + PGA1_262p01810 0.89 -0.8 200,075 - PGA1_262p01810 0.89 +3.7 200,075 - PGA1_262p01810 0.89 +0.1 200,075 - PGA1_262p01810 0.89 +0.7 200,075 - PGA1_262p01810 0.89 +0.8 200,075 - PGA1_262p01810 0.89 +1.6 200,075 - PGA1_262p01810 0.89 +0.1 200,081 + PGA1_262p01810 0.90 +0.6 200,185 + -0.7 200,308 + -1.2 200,313 + -2.2 200,321 - PGA1_262p01820 0.11 +0.6 200,418 + PGA1_262p01820 0.26 -0.6 200,433 + PGA1_262p01820 0.28 -1.0 200,737 - PGA1_262p01820 0.75 +1.1 200,761 + PGA1_262p01820 0.78 +0.9 200,761 + PGA1_262p01820 0.78 +1.3 200,773 + PGA1_262p01820 0.80 -0.9 200,786 - PGA1_262p01820 0.82 +0.2 200,872 - -0.1 200,905 + +0.5 200,905 + -0.6 200,905 + +0.6 200,913 - -0.1 200,918 - -0.4 200,923 + -2.1 200,977 + -2.6 200,977 + +2.2 200,977 + -1.6 200,985 - -1.2 200,985 - +0.2 200,985 - +0.2 200,992 + -1.1 200,999 + -0.4 201,073 + -0.6 201,074 - +0.7 201,074 - -1.1 201,081 - +0.6 201,082 - -0.6 201,112 - +0.4 201,135 + +1.1 201,181 + -0.9 201,254 + -0.2
Or see this region's nucleotide sequence