Experiment: m.b. Nickel (II) chloride 0.625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c21920 and PGA1_c21930 are separated by 125 nucleotides PGA1_c21930 and PGA1_c21940 are separated by 440 nucleotides
PGA1_c21920: PGA1_c21920 - Integral membrane protein, interacts with FtsH, at 2,273,783 to 2,274,559
_c21920
PGA1_c21930: PGA1_c21930 - acetyltransferase domain-containing protein, at 2,274,685 to 2,275,158
_c21930
PGA1_c21940: PGA1_c21940 - 50S ribosomal protein L33, at 2,275,599 to 2,275,766
_c21940
Position (kb)
2274
2275
2276 Strain fitness (log2 ratio)
-2
-1
0
1 at 2273.686 kb on - strand at 2273.686 kb on - strand at 2273.686 kb on - strand at 2273.686 kb on - strand at 2273.727 kb on - strand at 2273.866 kb on + strand, within PGA1_c21920 at 2273.950 kb on + strand, within PGA1_c21920 at 2273.963 kb on + strand, within PGA1_c21920 at 2274.688 kb on + strand at 2274.832 kb on - strand, within PGA1_c21930 at 2274.869 kb on + strand, within PGA1_c21930 at 2274.881 kb on + strand, within PGA1_c21930 at 2274.929 kb on - strand, within PGA1_c21930 at 2274.940 kb on + strand, within PGA1_c21930 at 2274.940 kb on + strand, within PGA1_c21930 at 2274.940 kb on + strand, within PGA1_c21930 at 2274.940 kb on + strand, within PGA1_c21930 at 2274.940 kb on + strand, within PGA1_c21930 at 2274.948 kb on - strand, within PGA1_c21930 at 2275.021 kb on + strand, within PGA1_c21930 at 2275.021 kb on + strand, within PGA1_c21930 at 2275.042 kb on + strand, within PGA1_c21930 at 2275.070 kb on + strand, within PGA1_c21930 at 2275.078 kb on + strand, within PGA1_c21930 at 2275.078 kb on + strand, within PGA1_c21930 at 2275.078 kb on - strand, within PGA1_c21930 at 2275.163 kb on + strand at 2275.171 kb on - strand at 2275.171 kb on - strand at 2275.286 kb on + strand at 2275.298 kb on + strand at 2275.306 kb on - strand at 2275.321 kb on + strand at 2275.356 kb on + strand at 2275.369 kb on + strand at 2275.375 kb on + strand at 2275.379 kb on + strand at 2275.379 kb on + strand at 2275.486 kb on - strand at 2275.491 kb on - strand at 2275.540 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 0.625 mM remove 2,273,686 - -0.9 2,273,686 - +0.4 2,273,686 - +0.1 2,273,686 - +0.8 2,273,727 - -0.4 2,273,866 + PGA1_c21920 0.11 +1.1 2,273,950 + PGA1_c21920 0.21 +0.4 2,273,963 + PGA1_c21920 0.23 +0.5 2,274,688 + -1.4 2,274,832 - PGA1_c21930 0.31 +0.5 2,274,869 + PGA1_c21930 0.39 -0.1 2,274,881 + PGA1_c21930 0.41 +0.8 2,274,929 - PGA1_c21930 0.51 -0.3 2,274,940 + PGA1_c21930 0.54 -0.2 2,274,940 + PGA1_c21930 0.54 -0.2 2,274,940 + PGA1_c21930 0.54 -0.5 2,274,940 + PGA1_c21930 0.54 -1.2 2,274,940 + PGA1_c21930 0.54 -0.2 2,274,948 - PGA1_c21930 0.55 -0.1 2,275,021 + PGA1_c21930 0.71 +0.4 2,275,021 + PGA1_c21930 0.71 -0.0 2,275,042 + PGA1_c21930 0.75 -0.6 2,275,070 + PGA1_c21930 0.81 -2.0 2,275,078 + PGA1_c21930 0.83 -0.9 2,275,078 + PGA1_c21930 0.83 -0.0 2,275,078 - PGA1_c21930 0.83 -0.3 2,275,163 + +1.3 2,275,171 - -0.1 2,275,171 - +1.2 2,275,286 + -0.9 2,275,298 + -1.4 2,275,306 - -1.5 2,275,321 + -1.9 2,275,356 + +0.2 2,275,369 + -0.6 2,275,375 + +0.6 2,275,379 + -2.0 2,275,379 + -0.3 2,275,486 - -1.6 2,275,491 - -0.0 2,275,540 - +0.7
Or see this region's nucleotide sequence