Experiment: m.b. Cobalt chloride 0.32 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1747 and HP15_1748 are separated by 0 nucleotides HP15_1748 and HP15_1749 overlap by 8 nucleotides
HP15_1747: HP15_1747 - cytochrome d ubiquinol oxidase, subunit II, at 1,845,768 to 1,846,769
_1747
HP15_1748: HP15_1748 - cysteine/glutathione ABC transporter membrane/ATP-binding component, at 1,846,770 to 1,848,482
_1748
HP15_1749: HP15_1749 - transport ATP-binding protein CydC, at 1,848,475 to 1,850,091
_1749
Position (kb)
1846
1847
1848
1849 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1845.834 kb on - strand at 1845.842 kb on - strand at 1845.892 kb on - strand, within HP15_1747 at 1846.212 kb on - strand, within HP15_1747 at 1846.239 kb on - strand, within HP15_1747 at 1846.441 kb on + strand, within HP15_1747 at 1846.481 kb on - strand, within HP15_1747 at 1846.557 kb on - strand, within HP15_1747 at 1846.581 kb on + strand, within HP15_1747 at 1846.617 kb on + strand, within HP15_1747 at 1846.703 kb on + strand at 1846.758 kb on + strand at 1846.758 kb on + strand at 1846.912 kb on - strand at 1846.973 kb on + strand, within HP15_1748 at 1846.988 kb on + strand, within HP15_1748 at 1847.010 kb on - strand, within HP15_1748 at 1847.167 kb on + strand, within HP15_1748 at 1847.333 kb on - strand, within HP15_1748 at 1847.387 kb on + strand, within HP15_1748 at 1847.454 kb on - strand, within HP15_1748 at 1847.635 kb on + strand, within HP15_1748 at 1847.643 kb on - strand, within HP15_1748 at 1847.646 kb on + strand, within HP15_1748 at 1847.809 kb on + strand, within HP15_1748 at 1847.817 kb on - strand, within HP15_1748 at 1847.817 kb on - strand, within HP15_1748 at 1848.026 kb on - strand, within HP15_1748 at 1848.069 kb on + strand, within HP15_1748 at 1848.169 kb on - strand, within HP15_1748 at 1848.201 kb on - strand, within HP15_1748 at 1848.239 kb on - strand, within HP15_1748 at 1848.388 kb on + strand at 1848.401 kb on - strand at 1848.467 kb on + strand at 1848.475 kb on - strand at 1848.627 kb on + strand at 1848.707 kb on - strand, within HP15_1749 at 1848.717 kb on - strand, within HP15_1749 at 1848.717 kb on - strand, within HP15_1749 at 1848.823 kb on - strand, within HP15_1749 at 1848.833 kb on - strand, within HP15_1749 at 1848.918 kb on - strand, within HP15_1749 at 1849.035 kb on + strand, within HP15_1749 at 1849.035 kb on + strand, within HP15_1749 at 1849.123 kb on + strand, within HP15_1749 at 1849.185 kb on + strand, within HP15_1749 at 1849.193 kb on - strand, within HP15_1749 at 1849.233 kb on + strand, within HP15_1749 at 1849.234 kb on + strand, within HP15_1749 at 1849.294 kb on - strand, within HP15_1749 at 1849.304 kb on - strand, within HP15_1749 at 1849.365 kb on + strand, within HP15_1749 at 1849.365 kb on + strand, within HP15_1749 at 1849.365 kb on + strand, within HP15_1749 at 1849.373 kb on - strand, within HP15_1749
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.32 mM remove 1,845,834 - -1.3 1,845,842 - -1.4 1,845,892 - HP15_1747 0.12 -1.7 1,846,212 - HP15_1747 0.44 -1.5 1,846,239 - HP15_1747 0.47 -1.9 1,846,441 + HP15_1747 0.67 -1.2 1,846,481 - HP15_1747 0.71 -2.1 1,846,557 - HP15_1747 0.79 -1.3 1,846,581 + HP15_1747 0.81 -1.5 1,846,617 + HP15_1747 0.85 -1.8 1,846,703 + -1.9 1,846,758 + -2.2 1,846,758 + -1.4 1,846,912 - -0.2 1,846,973 + HP15_1748 0.12 -1.9 1,846,988 + HP15_1748 0.13 -2.1 1,847,010 - HP15_1748 0.14 -1.1 1,847,167 + HP15_1748 0.23 -2.1 1,847,333 - HP15_1748 0.33 -0.6 1,847,387 + HP15_1748 0.36 -2.7 1,847,454 - HP15_1748 0.40 -0.7 1,847,635 + HP15_1748 0.50 -1.8 1,847,643 - HP15_1748 0.51 -0.9 1,847,646 + HP15_1748 0.51 -0.3 1,847,809 + HP15_1748 0.61 -3.3 1,847,817 - HP15_1748 0.61 -1.9 1,847,817 - HP15_1748 0.61 -1.5 1,848,026 - HP15_1748 0.73 -0.4 1,848,069 + HP15_1748 0.76 -1.0 1,848,169 - HP15_1748 0.82 -3.9 1,848,201 - HP15_1748 0.84 -0.9 1,848,239 - HP15_1748 0.86 -1.3 1,848,388 + -1.1 1,848,401 - -1.7 1,848,467 + -0.3 1,848,475 - -2.1 1,848,627 + -2.0 1,848,707 - HP15_1749 0.14 -1.6 1,848,717 - HP15_1749 0.15 -0.8 1,848,717 - HP15_1749 0.15 -2.6 1,848,823 - HP15_1749 0.22 -1.6 1,848,833 - HP15_1749 0.22 -1.2 1,848,918 - HP15_1749 0.27 -0.3 1,849,035 + HP15_1749 0.35 -1.7 1,849,035 + HP15_1749 0.35 -0.3 1,849,123 + HP15_1749 0.40 -2.1 1,849,185 + HP15_1749 0.44 -1.2 1,849,193 - HP15_1749 0.44 -2.5 1,849,233 + HP15_1749 0.47 -1.3 1,849,234 + HP15_1749 0.47 -0.1 1,849,294 - HP15_1749 0.51 -1.2 1,849,304 - HP15_1749 0.51 -1.3 1,849,365 + HP15_1749 0.55 -1.0 1,849,365 + HP15_1749 0.55 -1.0 1,849,365 + HP15_1749 0.55 -0.6 1,849,373 - HP15_1749 0.56 -1.1
Or see this region's nucleotide sequence