Strain Fitness in Marinobacter adhaerens HP15 around HP15_1748

Experiment: m.b. Cobalt chloride 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1747 and HP15_1748 are separated by 0 nucleotidesHP15_1748 and HP15_1749 overlap by 8 nucleotides HP15_1747: HP15_1747 - cytochrome d ubiquinol oxidase, subunit II, at 1,845,768 to 1,846,769 _1747 HP15_1748: HP15_1748 - cysteine/glutathione ABC transporter membrane/ATP-binding component, at 1,846,770 to 1,848,482 _1748 HP15_1749: HP15_1749 - transport ATP-binding protein CydC, at 1,848,475 to 1,850,091 _1749 Position (kb) 1846 1847 1848 1849Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1845.834 kb on - strandat 1845.842 kb on - strandat 1845.892 kb on - strand, within HP15_1747at 1846.212 kb on - strand, within HP15_1747at 1846.239 kb on - strand, within HP15_1747at 1846.441 kb on + strand, within HP15_1747at 1846.481 kb on - strand, within HP15_1747at 1846.557 kb on - strand, within HP15_1747at 1846.581 kb on + strand, within HP15_1747at 1846.617 kb on + strand, within HP15_1747at 1846.703 kb on + strandat 1846.758 kb on + strandat 1846.758 kb on + strandat 1846.912 kb on - strandat 1846.973 kb on + strand, within HP15_1748at 1846.988 kb on + strand, within HP15_1748at 1847.010 kb on - strand, within HP15_1748at 1847.167 kb on + strand, within HP15_1748at 1847.333 kb on - strand, within HP15_1748at 1847.387 kb on + strand, within HP15_1748at 1847.454 kb on - strand, within HP15_1748at 1847.635 kb on + strand, within HP15_1748at 1847.643 kb on - strand, within HP15_1748at 1847.646 kb on + strand, within HP15_1748at 1847.809 kb on + strand, within HP15_1748at 1847.817 kb on - strand, within HP15_1748at 1847.817 kb on - strand, within HP15_1748at 1848.026 kb on - strand, within HP15_1748at 1848.069 kb on + strand, within HP15_1748at 1848.169 kb on - strand, within HP15_1748at 1848.201 kb on - strand, within HP15_1748at 1848.239 kb on - strand, within HP15_1748at 1848.388 kb on + strandat 1848.401 kb on - strandat 1848.467 kb on + strandat 1848.475 kb on - strandat 1848.627 kb on + strandat 1848.707 kb on - strand, within HP15_1749at 1848.717 kb on - strand, within HP15_1749at 1848.717 kb on - strand, within HP15_1749at 1848.823 kb on - strand, within HP15_1749at 1848.833 kb on - strand, within HP15_1749at 1848.918 kb on - strand, within HP15_1749at 1849.035 kb on + strand, within HP15_1749at 1849.035 kb on + strand, within HP15_1749at 1849.123 kb on + strand, within HP15_1749at 1849.185 kb on + strand, within HP15_1749at 1849.193 kb on - strand, within HP15_1749at 1849.233 kb on + strand, within HP15_1749at 1849.234 kb on + strand, within HP15_1749at 1849.294 kb on - strand, within HP15_1749at 1849.304 kb on - strand, within HP15_1749at 1849.365 kb on + strand, within HP15_1749at 1849.365 kb on + strand, within HP15_1749at 1849.365 kb on + strand, within HP15_1749at 1849.373 kb on - strand, within HP15_1749

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.32 mM
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1,845,834 - -1.3
1,845,842 - -1.4
1,845,892 - HP15_1747 0.12 -1.7
1,846,212 - HP15_1747 0.44 -1.5
1,846,239 - HP15_1747 0.47 -1.9
1,846,441 + HP15_1747 0.67 -1.2
1,846,481 - HP15_1747 0.71 -2.1
1,846,557 - HP15_1747 0.79 -1.3
1,846,581 + HP15_1747 0.81 -1.5
1,846,617 + HP15_1747 0.85 -1.8
1,846,703 + -1.9
1,846,758 + -2.2
1,846,758 + -1.4
1,846,912 - -0.2
1,846,973 + HP15_1748 0.12 -1.9
1,846,988 + HP15_1748 0.13 -2.1
1,847,010 - HP15_1748 0.14 -1.1
1,847,167 + HP15_1748 0.23 -2.1
1,847,333 - HP15_1748 0.33 -0.6
1,847,387 + HP15_1748 0.36 -2.7
1,847,454 - HP15_1748 0.40 -0.7
1,847,635 + HP15_1748 0.50 -1.8
1,847,643 - HP15_1748 0.51 -0.9
1,847,646 + HP15_1748 0.51 -0.3
1,847,809 + HP15_1748 0.61 -3.3
1,847,817 - HP15_1748 0.61 -1.9
1,847,817 - HP15_1748 0.61 -1.5
1,848,026 - HP15_1748 0.73 -0.4
1,848,069 + HP15_1748 0.76 -1.0
1,848,169 - HP15_1748 0.82 -3.9
1,848,201 - HP15_1748 0.84 -0.9
1,848,239 - HP15_1748 0.86 -1.3
1,848,388 + -1.1
1,848,401 - -1.7
1,848,467 + -0.3
1,848,475 - -2.1
1,848,627 + -2.0
1,848,707 - HP15_1749 0.14 -1.6
1,848,717 - HP15_1749 0.15 -0.8
1,848,717 - HP15_1749 0.15 -2.6
1,848,823 - HP15_1749 0.22 -1.6
1,848,833 - HP15_1749 0.22 -1.2
1,848,918 - HP15_1749 0.27 -0.3
1,849,035 + HP15_1749 0.35 -1.7
1,849,035 + HP15_1749 0.35 -0.3
1,849,123 + HP15_1749 0.40 -2.1
1,849,185 + HP15_1749 0.44 -1.2
1,849,193 - HP15_1749 0.44 -2.5
1,849,233 + HP15_1749 0.47 -1.3
1,849,234 + HP15_1749 0.47 -0.1
1,849,294 - HP15_1749 0.51 -1.2
1,849,304 - HP15_1749 0.51 -1.3
1,849,365 + HP15_1749 0.55 -1.0
1,849,365 + HP15_1749 0.55 -1.0
1,849,365 + HP15_1749 0.55 -0.6
1,849,373 - HP15_1749 0.56 -1.1

Or see this region's nucleotide sequence