Experiment: m.b. Cobalt chloride 0.625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07510 and PGA1_c07520 are separated by 31 nucleotides PGA1_c07520 and PGA1_c07530 are separated by 64 nucleotides PGA1_c07530 and PGA1_c07540 are separated by 362 nucleotides
PGA1_c07510: PGA1_c07510 - DNA/RNA helicase-like protein, at 774,796 to 777,813
_c07510
PGA1_c07520: PGA1_c07520 - putative heat shock protein, at 777,845 to 778,210
_c07520
PGA1_c07530: PGA1_c07530 - ferredoxin FdxA, at 778,275 to 778,613
_c07530
PGA1_c07540: PGA1_c07540 - transcription factor carD-like protein, at 778,976 to 779,488
_c07540
Position (kb)
778
779 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 777.304 kb on + strand, within PGA1_c07510 at 777.310 kb on - strand, within PGA1_c07510 at 777.521 kb on - strand at 777.528 kb on - strand at 777.544 kb on - strand at 777.608 kb on - strand at 777.714 kb on - strand at 777.717 kb on - strand at 777.720 kb on + strand at 777.720 kb on + strand at 777.768 kb on - strand at 777.792 kb on - strand at 777.796 kb on - strand at 777.900 kb on + strand, within PGA1_c07520 at 777.900 kb on + strand, within PGA1_c07520 at 777.900 kb on - strand, within PGA1_c07520 at 777.922 kb on + strand, within PGA1_c07520 at 777.930 kb on - strand, within PGA1_c07520 at 778.057 kb on + strand, within PGA1_c07520 at 778.060 kb on - strand, within PGA1_c07520 at 778.150 kb on - strand, within PGA1_c07520 at 778.184 kb on - strand at 778.633 kb on - strand at 778.650 kb on - strand at 778.738 kb on + strand at 779.452 kb on + strand at 779.503 kb on + strand at 779.561 kb on - strand at 779.598 kb on + strand at 779.606 kb on - strand at 779.606 kb on - strand at 779.612 kb on + strand at 779.612 kb on + strand at 779.612 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.625 mM remove 777,304 + PGA1_c07510 0.83 +1.5 777,310 - PGA1_c07510 0.83 +1.7 777,521 - +1.0 777,528 - +1.5 777,544 - +1.5 777,608 - +0.9 777,714 - +1.7 777,717 - +0.6 777,720 + +0.3 777,720 + +0.9 777,768 - +2.2 777,792 - +1.1 777,796 - +2.0 777,900 + PGA1_c07520 0.15 -0.0 777,900 + PGA1_c07520 0.15 +0.9 777,900 - PGA1_c07520 0.15 +0.3 777,922 + PGA1_c07520 0.21 -0.4 777,930 - PGA1_c07520 0.23 +0.3 778,057 + PGA1_c07520 0.58 +0.1 778,060 - PGA1_c07520 0.59 -0.3 778,150 - PGA1_c07520 0.83 +0.5 778,184 - +1.3 778,633 - +0.3 778,650 - -1.0 778,738 + +0.7 779,452 + -0.2 779,503 + -2.1 779,561 - +0.8 779,598 + -0.0 779,606 - +1.5 779,606 - -0.1 779,612 + -0.1 779,612 + -0.9 779,612 + -0.4
Or see this region's nucleotide sequence