Experiment: m.b. Cobalt chloride 0.625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06190 and PGA1_c06200 are separated by 64 nucleotides PGA1_c06200 and PGA1_c06210 are separated by 12 nucleotides PGA1_c06210 and PGA1_c06220 are separated by 254 nucleotides
PGA1_c06190: PGA1_c06190 - hypothetical protein, at 632,900 to 633,391
_c06190
PGA1_c06200: PGA1_c06200 - probable succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B, at 633,456 to 634,085
_c06200
PGA1_c06210: PGA1_c06210 - probable succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A, at 634,098 to 634,817
_c06210
PGA1_c06220: PGA1_c06220 - DNA topoisomerase TopA, at 635,072 to 637,774
_c06220
Position (kb) 634
635 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 633.103 kb on - strand, within PGA1_c06190 at 633.121 kb on + strand, within PGA1_c06190 at 633.137 kb on + strand, within PGA1_c06190 at 633.184 kb on - strand, within PGA1_c06190 at 633.201 kb on + strand, within PGA1_c06190 at 633.201 kb on + strand, within PGA1_c06190 at 633.201 kb on + strand, within PGA1_c06190 at 633.220 kb on + strand, within PGA1_c06190 at 633.220 kb on + strand, within PGA1_c06190 at 633.222 kb on + strand, within PGA1_c06190 at 633.228 kb on - strand, within PGA1_c06190 at 633.257 kb on - strand, within PGA1_c06190 at 633.444 kb on + strand at 633.476 kb on + strand at 633.484 kb on - strand at 633.565 kb on - strand, within PGA1_c06200 at 633.610 kb on - strand, within PGA1_c06200 at 633.695 kb on - strand, within PGA1_c06200 at 633.705 kb on + strand, within PGA1_c06200 at 633.713 kb on - strand, within PGA1_c06200 at 633.731 kb on + strand, within PGA1_c06200 at 633.830 kb on - strand, within PGA1_c06200 at 633.857 kb on + strand, within PGA1_c06200 at 633.880 kb on + strand, within PGA1_c06200 at 633.890 kb on + strand, within PGA1_c06200 at 634.051 kb on - strand at 634.074 kb on + strand at 634.111 kb on - strand at 634.240 kb on + strand, within PGA1_c06210 at 634.414 kb on - strand, within PGA1_c06210 at 634.438 kb on + strand, within PGA1_c06210 at 634.456 kb on - strand, within PGA1_c06210 at 634.491 kb on - strand, within PGA1_c06210 at 634.583 kb on + strand, within PGA1_c06210 at 634.679 kb on - strand, within PGA1_c06210 at 634.733 kb on + strand, within PGA1_c06210 at 634.733 kb on + strand, within PGA1_c06210 at 634.779 kb on + strand at 634.834 kb on - strand at 634.853 kb on + strand at 634.853 kb on + strand at 634.861 kb on - strand at 634.935 kb on + strand at 634.974 kb on - strand at 634.976 kb on + strand at 634.976 kb on + strand at 635.018 kb on + strand at 635.034 kb on + strand at 635.198 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.625 mM remove 633,103 - PGA1_c06190 0.41 +0.2 633,121 + PGA1_c06190 0.45 -0.1 633,137 + PGA1_c06190 0.48 -0.7 633,184 - PGA1_c06190 0.58 -0.4 633,201 + PGA1_c06190 0.61 +0.2 633,201 + PGA1_c06190 0.61 -1.1 633,201 + PGA1_c06190 0.61 -0.2 633,220 + PGA1_c06190 0.65 -0.6 633,220 + PGA1_c06190 0.65 +0.1 633,222 + PGA1_c06190 0.65 +0.6 633,228 - PGA1_c06190 0.67 +1.0 633,257 - PGA1_c06190 0.73 +0.0 633,444 + -0.6 633,476 + -0.5 633,484 - -0.5 633,565 - PGA1_c06200 0.17 -0.2 633,610 - PGA1_c06200 0.24 -0.8 633,695 - PGA1_c06200 0.38 +0.1 633,705 + PGA1_c06200 0.40 +0.5 633,713 - PGA1_c06200 0.41 +0.5 633,731 + PGA1_c06200 0.44 +0.7 633,830 - PGA1_c06200 0.59 -1.3 633,857 + PGA1_c06200 0.64 -0.4 633,880 + PGA1_c06200 0.67 +0.7 633,890 + PGA1_c06200 0.69 -0.2 634,051 - -0.3 634,074 + +0.5 634,111 - +0.0 634,240 + PGA1_c06210 0.20 +0.1 634,414 - PGA1_c06210 0.44 -1.3 634,438 + PGA1_c06210 0.47 -2.2 634,456 - PGA1_c06210 0.50 +0.6 634,491 - PGA1_c06210 0.55 -0.9 634,583 + PGA1_c06210 0.67 -0.5 634,679 - PGA1_c06210 0.81 -2.9 634,733 + PGA1_c06210 0.88 -0.9 634,733 + PGA1_c06210 0.88 -0.3 634,779 + -0.4 634,834 - -0.1 634,853 + +0.0 634,853 + +0.7 634,861 - -0.2 634,935 + +0.4 634,974 - +0.3 634,976 + -0.4 634,976 + +0.7 635,018 + +0.4 635,034 + -0.0 635,198 - -0.2
Or see this region's nucleotide sequence