Experiment: m.b. Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2942 and HP15_2943 are separated by 101 nucleotides HP15_2943 and HP15_2944 overlap by 8 nucleotides HP15_2944 and HP15_2945 are separated by 15 nucleotides
HP15_2942: HP15_2942 - tonB-dependent receptor protein, at 3,084,397 to 3,086,472
_2942
HP15_2943: HP15_2943 - LrgB family protein, at 3,086,574 to 3,087,311
_2943
HP15_2944: HP15_2944 - LrgA, at 3,087,304 to 3,087,684
_2944
HP15_2945: HP15_2945 - bile acid: sodium symporter, at 3,087,700 to 3,088,620
_2945
Position (kb)
3087
3088 Strain fitness (log2 ratio)
-1
0
1 at 3086.383 kb on + strand at 3086.395 kb on - strand at 3086.430 kb on - strand at 3086.457 kb on + strand at 3086.485 kb on + strand at 3086.485 kb on + strand at 3086.502 kb on - strand at 3086.713 kb on - strand, within HP15_2943 at 3086.720 kb on - strand, within HP15_2943 at 3086.781 kb on - strand, within HP15_2943 at 3086.948 kb on + strand, within HP15_2943 at 3087.115 kb on + strand, within HP15_2943 at 3087.170 kb on + strand, within HP15_2943 at 3087.171 kb on - strand, within HP15_2943 at 3087.217 kb on - strand, within HP15_2943 at 3087.224 kb on + strand, within HP15_2943 at 3087.232 kb on - strand, within HP15_2943 at 3087.232 kb on - strand, within HP15_2943 at 3087.353 kb on + strand, within HP15_2944 at 3087.409 kb on - strand, within HP15_2944 at 3087.411 kb on + strand, within HP15_2944 at 3087.417 kb on + strand, within HP15_2944 at 3087.513 kb on - strand, within HP15_2944 at 3087.535 kb on + strand, within HP15_2944 at 3087.550 kb on - strand, within HP15_2944 at 3087.571 kb on + strand, within HP15_2944 at 3087.588 kb on + strand, within HP15_2944 at 3087.593 kb on + strand, within HP15_2944 at 3087.593 kb on + strand, within HP15_2944 at 3087.599 kb on + strand, within HP15_2944 at 3087.660 kb on + strand at 3087.660 kb on + strand at 3087.668 kb on - strand at 3087.668 kb on - strand at 3087.668 kb on - strand at 3087.742 kb on + strand at 3087.783 kb on - strand at 3087.871 kb on + strand, within HP15_2945 at 3087.903 kb on + strand, within HP15_2945 at 3087.947 kb on - strand, within HP15_2945 at 3087.947 kb on - strand, within HP15_2945 at 3088.075 kb on + strand, within HP15_2945 at 3088.281 kb on + strand, within HP15_2945 at 3088.281 kb on + strand, within HP15_2945 at 3088.281 kb on + strand, within HP15_2945 at 3088.281 kb on + strand, within HP15_2945 at 3088.281 kb on + strand, within HP15_2945 at 3088.281 kb on + strand, within HP15_2945 at 3088.281 kb on + strand, within HP15_2945 at 3088.286 kb on + strand, within HP15_2945 at 3088.289 kb on - strand, within HP15_2945 at 3088.289 kb on - strand, within HP15_2945 at 3088.289 kb on - strand, within HP15_2945 at 3088.289 kb on - strand, within HP15_2945 at 3088.289 kb on - strand, within HP15_2945 at 3088.289 kb on - strand, within HP15_2945 at 3088.289 kb on - strand, within HP15_2945 at 3088.293 kb on + strand, within HP15_2945 at 3088.293 kb on + strand, within HP15_2945 at 3088.298 kb on + strand, within HP15_2945 at 3088.301 kb on - strand, within HP15_2945 at 3088.341 kb on + strand, within HP15_2945 at 3088.517 kb on - strand, within HP15_2945 at 3088.672 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM remove 3,086,383 + +0.2 3,086,395 - +0.3 3,086,430 - -0.2 3,086,457 + +0.3 3,086,485 + -0.2 3,086,485 + +0.3 3,086,502 - +0.4 3,086,713 - HP15_2943 0.19 -1.0 3,086,720 - HP15_2943 0.20 -0.3 3,086,781 - HP15_2943 0.28 -0.2 3,086,948 + HP15_2943 0.51 -0.4 3,087,115 + HP15_2943 0.73 -0.6 3,087,170 + HP15_2943 0.81 +0.2 3,087,171 - HP15_2943 0.81 +0.3 3,087,217 - HP15_2943 0.87 -0.3 3,087,224 + HP15_2943 0.88 +0.2 3,087,232 - HP15_2943 0.89 +0.2 3,087,232 - HP15_2943 0.89 +0.5 3,087,353 + HP15_2944 0.13 -0.2 3,087,409 - HP15_2944 0.28 -0.5 3,087,411 + HP15_2944 0.28 -0.4 3,087,417 + HP15_2944 0.30 -0.1 3,087,513 - HP15_2944 0.55 -0.7 3,087,535 + HP15_2944 0.61 -0.3 3,087,550 - HP15_2944 0.65 -0.0 3,087,571 + HP15_2944 0.70 -0.4 3,087,588 + HP15_2944 0.75 -0.8 3,087,593 + HP15_2944 0.76 +0.1 3,087,593 + HP15_2944 0.76 -0.4 3,087,599 + HP15_2944 0.77 -0.6 3,087,660 + -0.1 3,087,660 + -0.6 3,087,668 - -0.3 3,087,668 - +0.3 3,087,668 - +0.0 3,087,742 + -0.3 3,087,783 - -0.1 3,087,871 + HP15_2945 0.19 -0.0 3,087,903 + HP15_2945 0.22 -0.1 3,087,947 - HP15_2945 0.27 +0.1 3,087,947 - HP15_2945 0.27 -0.2 3,088,075 + HP15_2945 0.41 -0.3 3,088,281 + HP15_2945 0.63 -0.1 3,088,281 + HP15_2945 0.63 +0.0 3,088,281 + HP15_2945 0.63 -0.1 3,088,281 + HP15_2945 0.63 +0.1 3,088,281 + HP15_2945 0.63 +0.4 3,088,281 + HP15_2945 0.63 +0.4 3,088,281 + HP15_2945 0.63 +0.1 3,088,286 + HP15_2945 0.64 +0.1 3,088,289 - HP15_2945 0.64 +0.0 3,088,289 - HP15_2945 0.64 +0.3 3,088,289 - HP15_2945 0.64 -0.2 3,088,289 - HP15_2945 0.64 -0.1 3,088,289 - HP15_2945 0.64 -0.5 3,088,289 - HP15_2945 0.64 +0.3 3,088,289 - HP15_2945 0.64 -0.2 3,088,293 + HP15_2945 0.64 -1.3 3,088,293 + HP15_2945 0.64 -0.1 3,088,298 + HP15_2945 0.65 +0.1 3,088,301 - HP15_2945 0.65 -0.1 3,088,341 + HP15_2945 0.70 +0.0 3,088,517 - HP15_2945 0.89 -0.3 3,088,672 + -0.3
Or see this region's nucleotide sequence