Strain Fitness in Marinobacter adhaerens HP15 around HP15_206

Experiment: m.b. Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_204 and HP15_205 are separated by 75 nucleotidesHP15_205 and HP15_206 overlap by 14 nucleotidesHP15_206 and HP15_207 are separated by 76 nucleotidesHP15_207 and HP15_208 are separated by 89 nucleotidesHP15_208 and HP15_209 are separated by 9 nucleotides HP15_204: HP15_204 - oligopeptide/dipeptide ABC transporter, ATPase subunit, at 191,528 to 192,538 _204 HP15_205: HP15_205 - protein containing bacterial regulatory protein, LysR domain, at 192,614 to 193,528 _205 HP15_206: HP15_206 - Xaa-Pro dipeptidase, at 193,515 to 194,837 _206 HP15_207: HP15_207 - BFD-like (2Fe-2S)-binding region, at 194,914 to 195,120 _207 HP15_208: HP15_208 - bacterioferritin, at 195,210 to 195,686 _208 HP15_209: HP15_209 - phosphomannomutase, at 195,696 to 197,054 _209 Position (kb) 193 194 195Strain fitness (log2 ratio) -1 0 1at 192.563 kb on - strandat 192.599 kb on + strandat 192.649 kb on + strandat 192.649 kb on + strandat 192.649 kb on + strandat 192.657 kb on - strandat 192.657 kb on - strandat 192.745 kb on - strand, within HP15_205at 193.027 kb on - strand, within HP15_205at 193.080 kb on - strand, within HP15_205at 193.100 kb on + strand, within HP15_205at 193.144 kb on - strand, within HP15_205at 193.191 kb on + strand, within HP15_205at 193.213 kb on - strand, within HP15_205at 193.305 kb on + strand, within HP15_205at 193.340 kb on + strand, within HP15_205at 193.340 kb on + strand, within HP15_205at 193.348 kb on - strand, within HP15_205at 193.380 kb on - strand, within HP15_205at 193.416 kb on - strand, within HP15_205at 193.459 kb on - strandat 193.496 kb on - strandat 193.654 kb on - strand, within HP15_206at 193.681 kb on + strand, within HP15_206at 193.697 kb on + strand, within HP15_206at 193.700 kb on - strand, within HP15_206at 193.705 kb on - strand, within HP15_206at 193.710 kb on - strand, within HP15_206at 193.759 kb on - strand, within HP15_206at 193.891 kb on + strand, within HP15_206at 193.899 kb on - strand, within HP15_206at 193.975 kb on + strand, within HP15_206at 193.975 kb on + strand, within HP15_206at 194.011 kb on + strand, within HP15_206at 194.019 kb on - strand, within HP15_206at 194.019 kb on - strand, within HP15_206at 194.021 kb on + strand, within HP15_206at 194.021 kb on + strand, within HP15_206at 194.021 kb on + strand, within HP15_206at 194.021 kb on + strand, within HP15_206at 194.029 kb on - strand, within HP15_206at 194.029 kb on - strand, within HP15_206at 194.029 kb on - strand, within HP15_206at 194.105 kb on - strand, within HP15_206at 194.182 kb on - strand, within HP15_206at 194.203 kb on - strand, within HP15_206at 194.295 kb on + strand, within HP15_206at 194.304 kb on - strand, within HP15_206at 194.304 kb on - strand, within HP15_206at 194.348 kb on + strand, within HP15_206at 194.348 kb on + strand, within HP15_206at 194.356 kb on - strand, within HP15_206at 194.357 kb on - strand, within HP15_206at 194.379 kb on - strand, within HP15_206at 194.522 kb on + strand, within HP15_206at 194.537 kb on + strand, within HP15_206at 194.637 kb on - strand, within HP15_206at 194.792 kb on + strandat 194.823 kb on - strandat 194.922 kb on - strandat 194.936 kb on + strand, within HP15_207at 195.163 kb on + strandat 195.177 kb on - strandat 195.249 kb on + strandat 195.525 kb on + strand, within HP15_208at 195.556 kb on + strand, within HP15_208at 195.702 kb on - strandat 195.762 kb on - strandat 195.829 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM
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192,563 - -0.2
192,599 + -0.3
192,649 + -0.8
192,649 + -0.5
192,649 + -0.4
192,657 - +1.0
192,657 - -0.7
192,745 - HP15_205 0.14 -0.5
193,027 - HP15_205 0.45 -0.6
193,080 - HP15_205 0.51 -0.3
193,100 + HP15_205 0.53 -0.5
193,144 - HP15_205 0.58 +0.1
193,191 + HP15_205 0.63 -1.0
193,213 - HP15_205 0.65 -0.7
193,305 + HP15_205 0.76 -0.2
193,340 + HP15_205 0.79 -0.3
193,340 + HP15_205 0.79 -0.2
193,348 - HP15_205 0.80 -0.7
193,380 - HP15_205 0.84 +0.0
193,416 - HP15_205 0.88 -0.4
193,459 - -0.4
193,496 - -0.4
193,654 - HP15_206 0.11 +0.2
193,681 + HP15_206 0.13 +0.2
193,697 + HP15_206 0.14 +1.1
193,700 - HP15_206 0.14 -0.7
193,705 - HP15_206 0.14 +0.3
193,710 - HP15_206 0.15 -0.2
193,759 - HP15_206 0.18 -0.2
193,891 + HP15_206 0.28 +0.8
193,899 - HP15_206 0.29 -0.4
193,975 + HP15_206 0.35 +1.3
193,975 + HP15_206 0.35 -0.0
194,011 + HP15_206 0.37 +0.3
194,019 - HP15_206 0.38 -1.0
194,019 - HP15_206 0.38 +0.4
194,021 + HP15_206 0.38 -0.4
194,021 + HP15_206 0.38 +0.3
194,021 + HP15_206 0.38 -0.2
194,021 + HP15_206 0.38 +0.8
194,029 - HP15_206 0.39 -0.0
194,029 - HP15_206 0.39 +0.5
194,029 - HP15_206 0.39 -1.0
194,105 - HP15_206 0.45 +0.0
194,182 - HP15_206 0.50 -1.0
194,203 - HP15_206 0.52 -0.2
194,295 + HP15_206 0.59 +0.3
194,304 - HP15_206 0.60 -0.8
194,304 - HP15_206 0.60 -0.5
194,348 + HP15_206 0.63 -0.1
194,348 + HP15_206 0.63 +0.2
194,356 - HP15_206 0.64 +0.0
194,357 - HP15_206 0.64 +1.3
194,379 - HP15_206 0.65 -0.5
194,522 + HP15_206 0.76 -0.2
194,537 + HP15_206 0.77 +0.2
194,637 - HP15_206 0.85 +0.5
194,792 + -0.6
194,823 - +0.2
194,922 - -0.6
194,936 + HP15_207 0.11 -0.2
195,163 + +0.3
195,177 - -0.7
195,249 + +0.1
195,525 + HP15_208 0.66 -0.0
195,556 + HP15_208 0.73 +0.2
195,702 - -0.5
195,762 - -0.2
195,829 - -0.0

Or see this region's nucleotide sequence