Experiment: Lomefloxacin 0.0002 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SOA0004 and SOA0005 are separated by 63 nucleotides SOA0005 and SO_A0006 are separated by 17 nucleotides SO_A0006 and SO_A0007 are separated by 299 nucleotides
SOA0004: SOA0004 - type II DNA modification methyltransferase (NCBI ptt file), at 3,938 to 5,650
SOA0004
SOA0005: SOA0005 - hypothetical protein (NCBI ptt file), at 5,714 to 6,019
SOA0005
SO_A0006: SO_A0006 - ParA family protein (NCBI), at 6,037 to 6,813
_A0006
SO_A0007: SO_A0007 - hypothetical protein (NCBI), at 7,113 to 7,850
_A0007
Position (kb) 6
7 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 5.117 kb on + strand, within SOA0004 at 5.126 kb on - strand, within SOA0004 at 5.207 kb on + strand, within SOA0004 at 5.208 kb on - strand, within SOA0004 at 5.354 kb on - strand, within SOA0004 at 5.550 kb on + strand at 5.567 kb on - strand at 5.568 kb on - strand at 5.569 kb on - strand at 5.675 kb on + strand at 5.699 kb on - strand at 5.701 kb on + strand at 5.709 kb on - strand at 5.709 kb on - strand at 5.720 kb on - strand at 5.738 kb on + strand at 5.738 kb on + strand at 5.738 kb on + strand at 5.738 kb on + strand at 5.738 kb on + strand at 5.738 kb on + strand at 5.738 kb on + strand at 5.738 kb on + strand at 5.738 kb on + strand at 5.738 kb on + strand at 5.738 kb on + strand at 5.744 kb on - strand at 5.746 kb on - strand, within SOA0005 at 5.746 kb on - strand, within SOA0005 at 5.746 kb on - strand, within SOA0005 at 5.746 kb on - strand, within SOA0005 at 5.746 kb on - strand, within SOA0005 at 5.746 kb on - strand, within SOA0005 at 5.746 kb on - strand, within SOA0005 at 5.746 kb on - strand, within SOA0005 at 5.746 kb on - strand, within SOA0005 at 5.746 kb on - strand, within SOA0005 at 5.746 kb on - strand, within SOA0005 at 5.746 kb on - strand, within SOA0005 at 5.746 kb on - strand, within SOA0005 at 5.746 kb on - strand, within SOA0005 at 5.751 kb on + strand, within SOA0005 at 5.751 kb on + strand, within SOA0005 at 5.751 kb on + strand, within SOA0005 at 5.754 kb on - strand, within SOA0005 at 5.757 kb on + strand, within SOA0005 at 5.759 kb on - strand, within SOA0005 at 5.759 kb on - strand, within SOA0005 at 5.759 kb on - strand, within SOA0005 at 5.759 kb on - strand, within SOA0005 at 5.769 kb on + strand, within SOA0005 at 5.774 kb on + strand, within SOA0005 at 5.779 kb on - strand, within SOA0005 at 5.789 kb on + strand, within SOA0005 at 5.802 kb on + strand, within SOA0005 at 5.810 kb on - strand, within SOA0005 at 5.825 kb on + strand, within SOA0005 at 5.825 kb on + strand, within SOA0005 at 5.838 kb on + strand, within SOA0005 at 5.887 kb on + strand, within SOA0005 at 5.926 kb on - strand, within SOA0005 at 5.946 kb on + strand, within SOA0005 at 6.076 kb on + strand at 6.076 kb on + strand at 6.076 kb on + strand at 6.076 kb on + strand at 6.084 kb on - strand at 6.084 kb on - strand at 6.105 kb on + strand at 6.121 kb on + strand, within SO_A0006 at 6.121 kb on + strand, within SO_A0006 at 6.139 kb on + strand, within SO_A0006 at 6.139 kb on + strand, within SO_A0006 at 6.144 kb on + strand, within SO_A0006 at 6.145 kb on + strand, within SO_A0006 at 6.147 kb on - strand, within SO_A0006 at 6.189 kb on - strand, within SO_A0006 at 6.199 kb on + strand, within SO_A0006 at 6.220 kb on + strand, within SO_A0006 at 6.243 kb on + strand, within SO_A0006 at 6.254 kb on + strand, within SO_A0006 at 6.271 kb on + strand, within SO_A0006 at 6.318 kb on - strand, within SO_A0006 at 6.402 kb on + strand, within SO_A0006 at 6.410 kb on - strand, within SO_A0006 at 6.410 kb on - strand, within SO_A0006 at 6.410 kb on - strand, within SO_A0006 at 6.410 kb on - strand, within SO_A0006 at 6.463 kb on - strand, within SO_A0006 at 6.500 kb on - strand, within SO_A0006 at 6.509 kb on - strand, within SO_A0006 at 6.509 kb on - strand, within SO_A0006 at 6.510 kb on - strand, within SO_A0006 at 6.510 kb on - strand, within SO_A0006 at 6.553 kb on - strand, within SO_A0006 at 6.569 kb on + strand, within SO_A0006 at 6.569 kb on + strand, within SO_A0006 at 6.569 kb on + strand, within SO_A0006 at 6.574 kb on + strand, within SO_A0006 at 6.577 kb on - strand, within SO_A0006 at 6.579 kb on + strand, within SO_A0006 at 6.595 kb on - strand, within SO_A0006 at 6.622 kb on + strand, within SO_A0006 at 6.635 kb on + strand, within SO_A0006 at 6.759 kb on - strand at 6.769 kb on - strand at 6.815 kb on + strand at 6.820 kb on + strand at 6.823 kb on - strand at 6.939 kb on + strand at 7.004 kb on + strand at 7.004 kb on + strand at 7.004 kb on + strand at 7.012 kb on - strand at 7.035 kb on + strand at 7.036 kb on + strand at 7.036 kb on + strand at 7.036 kb on + strand at 7.036 kb on + strand at 7.036 kb on + strand at 7.036 kb on + strand at 7.036 kb on + strand at 7.036 kb on + strand at 7.036 kb on + strand at 7.036 kb on + strand at 7.036 kb on + strand at 7.036 kb on + strand at 7.036 kb on + strand at 7.036 kb on + strand at 7.036 kb on + strand at 7.036 kb on + strand at 7.036 kb on + strand at 7.038 kb on + strand at 7.043 kb on - strand at 7.044 kb on - strand at 7.044 kb on - strand at 7.044 kb on - strand at 7.044 kb on - strand at 7.044 kb on - strand at 7.044 kb on - strand at 7.044 kb on - strand at 7.044 kb on - strand at 7.044 kb on - strand at 7.044 kb on - strand at 7.044 kb on - strand at 7.044 kb on - strand at 7.044 kb on - strand at 7.044 kb on - strand at 7.044 kb on - strand at 7.044 kb on - strand at 7.044 kb on - strand at 7.044 kb on - strand at 7.044 kb on - strand at 7.044 kb on - strand at 7.206 kb on + strand, within SO_A0007 at 7.207 kb on + strand, within SO_A0007 at 7.215 kb on - strand, within SO_A0007 at 7.215 kb on - strand, within SO_A0007 at 7.303 kb on - strand, within SO_A0007 at 7.366 kb on + strand, within SO_A0007 at 7.366 kb on + strand, within SO_A0007 at 7.366 kb on + strand, within SO_A0007 at 7.366 kb on + strand, within SO_A0007 at 7.366 kb on + strand, within SO_A0007 at 7.366 kb on + strand, within SO_A0007 at 7.366 kb on + strand, within SO_A0007 at 7.374 kb on - strand, within SO_A0007 at 7.374 kb on - strand, within SO_A0007 at 7.374 kb on - strand, within SO_A0007 at 7.374 kb on - strand, within SO_A0007 at 7.374 kb on - strand, within SO_A0007 at 7.374 kb on - strand, within SO_A0007 at 7.374 kb on - strand, within SO_A0007 at 7.411 kb on - strand, within SO_A0007 at 7.439 kb on + strand, within SO_A0007 at 7.447 kb on - strand, within SO_A0007
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.0002 mM remove 5,117 + SOA0004 0.69 -0.6 5,126 - SOA0004 0.69 -0.4 5,207 + SOA0004 0.74 -0.5 5,208 - SOA0004 0.74 -0.2 5,354 - SOA0004 0.83 +0.3 5,550 + -0.5 5,567 - +0.8 5,568 - -0.2 5,569 - -0.4 5,675 + -1.0 5,699 - -0.8 5,701 + -0.2 5,709 - -0.4 5,709 - -0.4 5,720 - -0.4 5,738 + -0.2 5,738 + -1.4 5,738 + -0.9 5,738 + -1.2 5,738 + -1.5 5,738 + -1.6 5,738 + -0.6 5,738 + -1.8 5,738 + -2.8 5,738 + -1.1 5,738 + -1.1 5,744 - -2.4 5,746 - SOA0005 0.10 -0.2 5,746 - SOA0005 0.10 -0.3 5,746 - SOA0005 0.10 -0.4 5,746 - SOA0005 0.10 -1.0 5,746 - SOA0005 0.10 -0.8 5,746 - SOA0005 0.10 -0.3 5,746 - SOA0005 0.10 -1.3 5,746 - SOA0005 0.10 -0.8 5,746 - SOA0005 0.10 -0.7 5,746 - SOA0005 0.10 -0.7 5,746 - SOA0005 0.10 -0.7 5,746 - SOA0005 0.10 -0.4 5,746 - SOA0005 0.10 -4.0 5,746 - SOA0005 0.10 -2.0 5,751 + SOA0005 0.12 -2.8 5,751 + SOA0005 0.12 -0.8 5,751 + SOA0005 0.12 -1.2 5,754 - SOA0005 0.13 -0.8 5,757 + SOA0005 0.14 -1.1 5,759 - SOA0005 0.15 -0.1 5,759 - SOA0005 0.15 -1.1 5,759 - SOA0005 0.15 -0.8 5,759 - SOA0005 0.15 -1.5 5,769 + SOA0005 0.18 -0.8 5,774 + SOA0005 0.20 -1.3 5,779 - SOA0005 0.21 -1.2 5,789 + SOA0005 0.25 -0.5 5,802 + SOA0005 0.29 -0.2 5,810 - SOA0005 0.31 -0.9 5,825 + SOA0005 0.36 -1.2 5,825 + SOA0005 0.36 -0.6 5,838 + SOA0005 0.41 -1.5 5,887 + SOA0005 0.57 -1.2 5,926 - SOA0005 0.69 -2.9 5,946 + SOA0005 0.76 -0.7 6,076 + -0.9 6,076 + -0.9 6,076 + -0.6 6,076 + -0.1 6,084 - -1.0 6,084 - -0.8 6,105 + -0.7 6,121 + SO_A0006 0.11 -1.0 6,121 + SO_A0006 0.11 -0.7 6,139 + SO_A0006 0.13 -0.8 6,139 + SO_A0006 0.13 -1.4 6,144 + SO_A0006 0.14 +0.6 6,145 + SO_A0006 0.14 -1.0 6,147 - SO_A0006 0.14 -0.6 6,189 - SO_A0006 0.20 -0.9 6,199 + SO_A0006 0.21 -1.9 6,220 + SO_A0006 0.24 -0.9 6,243 + SO_A0006 0.27 -0.7 6,254 + SO_A0006 0.28 -0.8 6,271 + SO_A0006 0.30 +0.1 6,318 - SO_A0006 0.36 -2.1 6,402 + SO_A0006 0.47 -1.2 6,410 - SO_A0006 0.48 -0.9 6,410 - SO_A0006 0.48 -0.7 6,410 - SO_A0006 0.48 -0.8 6,410 - SO_A0006 0.48 -2.1 6,463 - SO_A0006 0.55 -1.0 6,500 - SO_A0006 0.60 +0.4 6,509 - SO_A0006 0.61 -0.7 6,509 - SO_A0006 0.61 -0.9 6,510 - SO_A0006 0.61 -2.7 6,510 - SO_A0006 0.61 -1.6 6,553 - SO_A0006 0.66 -1.1 6,569 + SO_A0006 0.68 -1.2 6,569 + SO_A0006 0.68 -1.2 6,569 + SO_A0006 0.68 -0.7 6,574 + SO_A0006 0.69 -1.1 6,577 - SO_A0006 0.69 -1.0 6,579 + SO_A0006 0.70 -0.9 6,595 - SO_A0006 0.72 -0.5 6,622 + SO_A0006 0.75 -1.3 6,635 + SO_A0006 0.77 -0.9 6,759 - -0.9 6,769 - -0.5 6,815 + -1.6 6,820 + -1.2 6,823 - -1.4 6,939 + -0.9 7,004 + -0.3 7,004 + -0.4 7,004 + -2.5 7,012 - -0.2 7,035 + -0.7 7,036 + -0.8 7,036 + -1.3 7,036 + -0.1 7,036 + -0.9 7,036 + -0.6 7,036 + -0.1 7,036 + -0.6 7,036 + -0.5 7,036 + -0.5 7,036 + -0.7 7,036 + -0.6 7,036 + -0.7 7,036 + -0.6 7,036 + -0.6 7,036 + -0.7 7,036 + -0.9 7,036 + -1.4 7,038 + -1.6 7,043 - -0.5 7,044 - -1.2 7,044 - -1.1 7,044 - -0.5 7,044 - -1.8 7,044 - +0.2 7,044 - -0.4 7,044 - -0.1 7,044 - -1.0 7,044 - -0.5 7,044 - -0.9 7,044 - -1.2 7,044 - -0.9 7,044 - +1.0 7,044 - +1.1 7,044 - -0.7 7,044 - +0.2 7,044 - -1.1 7,044 - -0.5 7,044 - -0.4 7,044 - -0.8 7,206 + SO_A0007 0.13 -2.0 7,207 + SO_A0007 0.13 -0.3 7,215 - SO_A0007 0.14 -1.2 7,215 - SO_A0007 0.14 -0.9 7,303 - SO_A0007 0.26 +0.2 7,366 + SO_A0007 0.34 -1.0 7,366 + SO_A0007 0.34 -0.7 7,366 + SO_A0007 0.34 +0.1 7,366 + SO_A0007 0.34 -0.1 7,366 + SO_A0007 0.34 -0.7 7,366 + SO_A0007 0.34 -1.1 7,366 + SO_A0007 0.34 -0.5 7,374 - SO_A0007 0.35 -1.2 7,374 - SO_A0007 0.35 -1.2 7,374 - SO_A0007 0.35 -0.5 7,374 - SO_A0007 0.35 -0.8 7,374 - SO_A0007 0.35 -1.3 7,374 - SO_A0007 0.35 -0.9 7,374 - SO_A0007 0.35 -0.8 7,411 - SO_A0007 0.40 -0.2 7,439 + SO_A0007 0.44 -1.8 7,447 - SO_A0007 0.45 -0.7
Or see this region's nucleotide sequence