Experiment: Lomefloxacin 0.0002 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO4411 and SO4412 are separated by 540 nucleotides SO4412 and SO4413 are separated by 143 nucleotides
SO4411: SO4411 - hypothetical protein (NCBI ptt file), at 4,605,328 to 4,605,600
SO4411
SO4412: SO4412 - conserved domain protein (NCBI ptt file), at 4,606,141 to 4,606,464
SO4412
SO4413: SO4413 - hypothetical kynureninase (NCBI ptt file), at 4,606,608 to 4,607,744
SO4413
Position (kb)
4606
4607 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4605.221 kb on + strand at 4605.221 kb on + strand at 4605.221 kb on + strand at 4605.221 kb on + strand at 4605.229 kb on - strand at 4605.232 kb on + strand at 4605.278 kb on + strand at 4605.278 kb on + strand at 4605.279 kb on + strand at 4605.286 kb on - strand at 4605.287 kb on - strand at 4605.287 kb on - strand at 4605.288 kb on + strand at 4605.288 kb on + strand at 4605.288 kb on + strand at 4605.288 kb on + strand at 4605.288 kb on + strand at 4605.288 kb on + strand at 4605.288 kb on + strand at 4605.296 kb on - strand at 4605.296 kb on - strand at 4605.296 kb on - strand at 4605.296 kb on - strand at 4605.301 kb on - strand at 4605.342 kb on - strand at 4605.347 kb on + strand at 4605.360 kb on + strand, within SO4411 at 4605.394 kb on - strand, within SO4411 at 4605.397 kb on + strand, within SO4411 at 4605.397 kb on + strand, within SO4411 at 4605.405 kb on - strand, within SO4411 at 4605.405 kb on - strand, within SO4411 at 4605.415 kb on + strand, within SO4411 at 4605.415 kb on + strand, within SO4411 at 4605.422 kb on + strand, within SO4411 at 4605.423 kb on - strand, within SO4411 at 4605.423 kb on - strand, within SO4411 at 4605.455 kb on + strand, within SO4411 at 4605.458 kb on - strand, within SO4411 at 4605.460 kb on - strand, within SO4411 at 4605.475 kb on + strand, within SO4411 at 4605.657 kb on + strand at 4605.657 kb on + strand at 4605.657 kb on + strand at 4605.659 kb on - strand at 4605.762 kb on + strand at 4605.840 kb on + strand at 4605.860 kb on + strand at 4605.860 kb on + strand at 4605.860 kb on + strand at 4605.860 kb on + strand at 4605.860 kb on + strand at 4605.860 kb on + strand at 4605.860 kb on + strand at 4605.860 kb on + strand at 4605.868 kb on - strand at 4605.868 kb on - strand at 4605.868 kb on - strand at 4605.897 kb on + strand at 4605.924 kb on + strand at 4605.932 kb on - strand at 4605.940 kb on + strand at 4605.955 kb on + strand at 4606.010 kb on + strand at 4606.018 kb on - strand at 4606.059 kb on - strand at 4606.060 kb on + strand at 4606.135 kb on + strand at 4606.162 kb on + strand at 4606.177 kb on + strand, within SO4412 at 4606.177 kb on + strand, within SO4412 at 4606.177 kb on + strand, within SO4412 at 4606.177 kb on + strand, within SO4412 at 4606.185 kb on + strand, within SO4412 at 4606.185 kb on - strand, within SO4412 at 4606.185 kb on - strand, within SO4412 at 4606.185 kb on - strand, within SO4412 at 4606.199 kb on + strand, within SO4412 at 4606.199 kb on + strand, within SO4412 at 4606.199 kb on + strand, within SO4412 at 4606.201 kb on - strand, within SO4412 at 4606.222 kb on + strand, within SO4412 at 4606.224 kb on - strand, within SO4412 at 4606.244 kb on + strand, within SO4412 at 4606.267 kb on + strand, within SO4412 at 4606.267 kb on + strand, within SO4412 at 4606.275 kb on - strand, within SO4412 at 4606.322 kb on - strand, within SO4412 at 4606.342 kb on + strand, within SO4412 at 4606.350 kb on - strand, within SO4412 at 4606.380 kb on - strand, within SO4412 at 4606.499 kb on + strand at 4606.528 kb on - strand at 4606.549 kb on - strand at 4606.685 kb on + strand at 4606.685 kb on + strand at 4606.685 kb on + strand at 4606.809 kb on - strand, within SO4413 at 4606.827 kb on + strand, within SO4413 at 4606.845 kb on - strand, within SO4413 at 4606.855 kb on - strand, within SO4413 at 4606.855 kb on - strand, within SO4413 at 4606.917 kb on + strand, within SO4413 at 4606.963 kb on + strand, within SO4413 at 4607.108 kb on - strand, within SO4413 at 4607.180 kb on + strand, within SO4413 at 4607.252 kb on + strand, within SO4413 at 4607.293 kb on + strand, within SO4413 at 4607.298 kb on + strand, within SO4413 at 4607.330 kb on + strand, within SO4413 at 4607.330 kb on + strand, within SO4413 at 4607.338 kb on - strand, within SO4413 at 4607.421 kb on + strand, within SO4413
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.0002 mM remove 4,605,221 + -0.9 4,605,221 + -0.1 4,605,221 + +1.8 4,605,221 + +0.3 4,605,229 - +0.1 4,605,232 + -0.6 4,605,278 + -0.1 4,605,278 + -0.1 4,605,279 + +0.5 4,605,286 - -0.4 4,605,287 - -0.0 4,605,287 - +0.2 4,605,288 + +0.2 4,605,288 + +0.2 4,605,288 + +0.6 4,605,288 + -0.3 4,605,288 + +0.0 4,605,288 + +0.5 4,605,288 + -0.5 4,605,296 - +0.0 4,605,296 - -0.0 4,605,296 - +0.4 4,605,296 - +0.5 4,605,301 - -1.5 4,605,342 - -0.1 4,605,347 + +0.1 4,605,360 + SO4411 0.12 -0.2 4,605,394 - SO4411 0.24 +0.0 4,605,397 + SO4411 0.25 -0.2 4,605,397 + SO4411 0.25 -0.1 4,605,405 - SO4411 0.28 -0.5 4,605,405 - SO4411 0.28 +0.4 4,605,415 + SO4411 0.32 -0.3 4,605,415 + SO4411 0.32 +0.3 4,605,422 + SO4411 0.34 -0.1 4,605,423 - SO4411 0.35 +0.7 4,605,423 - SO4411 0.35 -0.4 4,605,455 + SO4411 0.47 -0.0 4,605,458 - SO4411 0.48 -0.9 4,605,460 - SO4411 0.48 -2.8 4,605,475 + SO4411 0.54 -0.2 4,605,657 + +0.1 4,605,657 + +0.5 4,605,657 + +0.4 4,605,659 - -0.1 4,605,762 + -0.6 4,605,840 + +0.2 4,605,860 + +0.8 4,605,860 + -0.7 4,605,860 + -0.1 4,605,860 + +0.1 4,605,860 + -0.1 4,605,860 + -0.3 4,605,860 + -0.2 4,605,860 + -0.8 4,605,868 - -0.3 4,605,868 - -0.7 4,605,868 - -0.4 4,605,897 + -1.9 4,605,924 + +0.6 4,605,932 - +0.6 4,605,940 + -0.0 4,605,955 + -0.1 4,606,010 + -0.4 4,606,018 - +0.6 4,606,059 - +0.2 4,606,060 + -1.2 4,606,135 + +0.7 4,606,162 + +0.1 4,606,177 + SO4412 0.11 +0.6 4,606,177 + SO4412 0.11 -2.3 4,606,177 + SO4412 0.11 +0.0 4,606,177 + SO4412 0.11 +0.2 4,606,185 + SO4412 0.14 +0.5 4,606,185 - SO4412 0.14 +1.4 4,606,185 - SO4412 0.14 -0.8 4,606,185 - SO4412 0.14 +0.1 4,606,199 + SO4412 0.18 -0.4 4,606,199 + SO4412 0.18 -0.8 4,606,199 + SO4412 0.18 +0.5 4,606,201 - SO4412 0.19 +0.6 4,606,222 + SO4412 0.25 +0.1 4,606,224 - SO4412 0.26 +0.0 4,606,244 + SO4412 0.32 -0.5 4,606,267 + SO4412 0.39 -1.0 4,606,267 + SO4412 0.39 +0.5 4,606,275 - SO4412 0.41 +0.2 4,606,322 - SO4412 0.56 -0.7 4,606,342 + SO4412 0.62 -0.2 4,606,350 - SO4412 0.65 +0.4 4,606,380 - SO4412 0.74 +0.9 4,606,499 + +0.8 4,606,528 - -0.3 4,606,549 - +0.7 4,606,685 + +1.1 4,606,685 + -0.5 4,606,685 + -0.3 4,606,809 - SO4413 0.18 -0.5 4,606,827 + SO4413 0.19 -0.9 4,606,845 - SO4413 0.21 +0.1 4,606,855 - SO4413 0.22 -0.1 4,606,855 - SO4413 0.22 -0.1 4,606,917 + SO4413 0.27 +0.0 4,606,963 + SO4413 0.31 -2.2 4,607,108 - SO4413 0.44 -0.1 4,607,180 + SO4413 0.50 -0.3 4,607,252 + SO4413 0.57 +0.2 4,607,293 + SO4413 0.60 +1.8 4,607,298 + SO4413 0.61 +0.4 4,607,330 + SO4413 0.64 -0.4 4,607,330 + SO4413 0.64 +0.6 4,607,338 - SO4413 0.64 +0.1 4,607,421 + SO4413 0.72 +1.5
Or see this region's nucleotide sequence