Strain Fitness in Shewanella oneidensis MR-1 around SO4412

Experiment: Lomefloxacin 0.0002 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO4411 and SO4412 are separated by 540 nucleotidesSO4412 and SO4413 are separated by 143 nucleotides SO4411: SO4411 - hypothetical protein (NCBI ptt file), at 4,605,328 to 4,605,600 SO4411 SO4412: SO4412 - conserved domain protein (NCBI ptt file), at 4,606,141 to 4,606,464 SO4412 SO4413: SO4413 - hypothetical kynureninase (NCBI ptt file), at 4,606,608 to 4,607,744 SO4413 Position (kb) 4606 4607Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4605.221 kb on + strandat 4605.221 kb on + strandat 4605.221 kb on + strandat 4605.221 kb on + strandat 4605.229 kb on - strandat 4605.232 kb on + strandat 4605.278 kb on + strandat 4605.278 kb on + strandat 4605.279 kb on + strandat 4605.286 kb on - strandat 4605.287 kb on - strandat 4605.287 kb on - strandat 4605.288 kb on + strandat 4605.288 kb on + strandat 4605.288 kb on + strandat 4605.288 kb on + strandat 4605.288 kb on + strandat 4605.288 kb on + strandat 4605.288 kb on + strandat 4605.296 kb on - strandat 4605.296 kb on - strandat 4605.296 kb on - strandat 4605.296 kb on - strandat 4605.301 kb on - strandat 4605.342 kb on - strandat 4605.347 kb on + strandat 4605.360 kb on + strand, within SO4411at 4605.394 kb on - strand, within SO4411at 4605.397 kb on + strand, within SO4411at 4605.397 kb on + strand, within SO4411at 4605.405 kb on - strand, within SO4411at 4605.405 kb on - strand, within SO4411at 4605.415 kb on + strand, within SO4411at 4605.415 kb on + strand, within SO4411at 4605.422 kb on + strand, within SO4411at 4605.423 kb on - strand, within SO4411at 4605.423 kb on - strand, within SO4411at 4605.455 kb on + strand, within SO4411at 4605.458 kb on - strand, within SO4411at 4605.460 kb on - strand, within SO4411at 4605.475 kb on + strand, within SO4411at 4605.657 kb on + strandat 4605.657 kb on + strandat 4605.657 kb on + strandat 4605.659 kb on - strandat 4605.762 kb on + strandat 4605.840 kb on + strandat 4605.860 kb on + strandat 4605.860 kb on + strandat 4605.860 kb on + strandat 4605.860 kb on + strandat 4605.860 kb on + strandat 4605.860 kb on + strandat 4605.860 kb on + strandat 4605.860 kb on + strandat 4605.868 kb on - strandat 4605.868 kb on - strandat 4605.868 kb on - strandat 4605.897 kb on + strandat 4605.924 kb on + strandat 4605.932 kb on - strandat 4605.940 kb on + strandat 4605.955 kb on + strandat 4606.010 kb on + strandat 4606.018 kb on - strandat 4606.059 kb on - strandat 4606.060 kb on + strandat 4606.135 kb on + strandat 4606.162 kb on + strandat 4606.177 kb on + strand, within SO4412at 4606.177 kb on + strand, within SO4412at 4606.177 kb on + strand, within SO4412at 4606.177 kb on + strand, within SO4412at 4606.185 kb on + strand, within SO4412at 4606.185 kb on - strand, within SO4412at 4606.185 kb on - strand, within SO4412at 4606.185 kb on - strand, within SO4412at 4606.199 kb on + strand, within SO4412at 4606.199 kb on + strand, within SO4412at 4606.199 kb on + strand, within SO4412at 4606.201 kb on - strand, within SO4412at 4606.222 kb on + strand, within SO4412at 4606.224 kb on - strand, within SO4412at 4606.244 kb on + strand, within SO4412at 4606.267 kb on + strand, within SO4412at 4606.267 kb on + strand, within SO4412at 4606.275 kb on - strand, within SO4412at 4606.322 kb on - strand, within SO4412at 4606.342 kb on + strand, within SO4412at 4606.350 kb on - strand, within SO4412at 4606.380 kb on - strand, within SO4412at 4606.499 kb on + strandat 4606.528 kb on - strandat 4606.549 kb on - strandat 4606.685 kb on + strandat 4606.685 kb on + strandat 4606.685 kb on + strandat 4606.809 kb on - strand, within SO4413at 4606.827 kb on + strand, within SO4413at 4606.845 kb on - strand, within SO4413at 4606.855 kb on - strand, within SO4413at 4606.855 kb on - strand, within SO4413at 4606.917 kb on + strand, within SO4413at 4606.963 kb on + strand, within SO4413at 4607.108 kb on - strand, within SO4413at 4607.180 kb on + strand, within SO4413at 4607.252 kb on + strand, within SO4413at 4607.293 kb on + strand, within SO4413at 4607.298 kb on + strand, within SO4413at 4607.330 kb on + strand, within SO4413at 4607.330 kb on + strand, within SO4413at 4607.338 kb on - strand, within SO4413at 4607.421 kb on + strand, within SO4413

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Per-strain Table

Position Strand Gene LocusTag Fraction Lomefloxacin 0.0002 mM
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4,605,221 + -0.9
4,605,221 + -0.1
4,605,221 + +1.8
4,605,221 + +0.3
4,605,229 - +0.1
4,605,232 + -0.6
4,605,278 + -0.1
4,605,278 + -0.1
4,605,279 + +0.5
4,605,286 - -0.4
4,605,287 - -0.0
4,605,287 - +0.2
4,605,288 + +0.2
4,605,288 + +0.2
4,605,288 + +0.6
4,605,288 + -0.3
4,605,288 + +0.0
4,605,288 + +0.5
4,605,288 + -0.5
4,605,296 - +0.0
4,605,296 - -0.0
4,605,296 - +0.4
4,605,296 - +0.5
4,605,301 - -1.5
4,605,342 - -0.1
4,605,347 + +0.1
4,605,360 + SO4411 0.12 -0.2
4,605,394 - SO4411 0.24 +0.0
4,605,397 + SO4411 0.25 -0.2
4,605,397 + SO4411 0.25 -0.1
4,605,405 - SO4411 0.28 -0.5
4,605,405 - SO4411 0.28 +0.4
4,605,415 + SO4411 0.32 -0.3
4,605,415 + SO4411 0.32 +0.3
4,605,422 + SO4411 0.34 -0.1
4,605,423 - SO4411 0.35 +0.7
4,605,423 - SO4411 0.35 -0.4
4,605,455 + SO4411 0.47 -0.0
4,605,458 - SO4411 0.48 -0.9
4,605,460 - SO4411 0.48 -2.8
4,605,475 + SO4411 0.54 -0.2
4,605,657 + +0.1
4,605,657 + +0.5
4,605,657 + +0.4
4,605,659 - -0.1
4,605,762 + -0.6
4,605,840 + +0.2
4,605,860 + +0.8
4,605,860 + -0.7
4,605,860 + -0.1
4,605,860 + +0.1
4,605,860 + -0.1
4,605,860 + -0.3
4,605,860 + -0.2
4,605,860 + -0.8
4,605,868 - -0.3
4,605,868 - -0.7
4,605,868 - -0.4
4,605,897 + -1.9
4,605,924 + +0.6
4,605,932 - +0.6
4,605,940 + -0.0
4,605,955 + -0.1
4,606,010 + -0.4
4,606,018 - +0.6
4,606,059 - +0.2
4,606,060 + -1.2
4,606,135 + +0.7
4,606,162 + +0.1
4,606,177 + SO4412 0.11 +0.6
4,606,177 + SO4412 0.11 -2.3
4,606,177 + SO4412 0.11 +0.0
4,606,177 + SO4412 0.11 +0.2
4,606,185 + SO4412 0.14 +0.5
4,606,185 - SO4412 0.14 +1.4
4,606,185 - SO4412 0.14 -0.8
4,606,185 - SO4412 0.14 +0.1
4,606,199 + SO4412 0.18 -0.4
4,606,199 + SO4412 0.18 -0.8
4,606,199 + SO4412 0.18 +0.5
4,606,201 - SO4412 0.19 +0.6
4,606,222 + SO4412 0.25 +0.1
4,606,224 - SO4412 0.26 +0.0
4,606,244 + SO4412 0.32 -0.5
4,606,267 + SO4412 0.39 -1.0
4,606,267 + SO4412 0.39 +0.5
4,606,275 - SO4412 0.41 +0.2
4,606,322 - SO4412 0.56 -0.7
4,606,342 + SO4412 0.62 -0.2
4,606,350 - SO4412 0.65 +0.4
4,606,380 - SO4412 0.74 +0.9
4,606,499 + +0.8
4,606,528 - -0.3
4,606,549 - +0.7
4,606,685 + +1.1
4,606,685 + -0.5
4,606,685 + -0.3
4,606,809 - SO4413 0.18 -0.5
4,606,827 + SO4413 0.19 -0.9
4,606,845 - SO4413 0.21 +0.1
4,606,855 - SO4413 0.22 -0.1
4,606,855 - SO4413 0.22 -0.1
4,606,917 + SO4413 0.27 +0.0
4,606,963 + SO4413 0.31 -2.2
4,607,108 - SO4413 0.44 -0.1
4,607,180 + SO4413 0.50 -0.3
4,607,252 + SO4413 0.57 +0.2
4,607,293 + SO4413 0.60 +1.8
4,607,298 + SO4413 0.61 +0.4
4,607,330 + SO4413 0.64 -0.4
4,607,330 + SO4413 0.64 +0.6
4,607,338 - SO4413 0.64 +0.1
4,607,421 + SO4413 0.72 +1.5

Or see this region's nucleotide sequence