Strain Fitness in Shewanella oneidensis MR-1 around SO3462

Experiment: Lomefloxacin 0.0002 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO3461 and recN are separated by 129 nucleotidesrecN and pgpA are separated by 136 nucleotidespgpA and thiL overlap by 1 nucleotides SO3461: SO3461 - Fatty acid transporter (from data), at 3,606,889 to 3,607,848 SO3461 SO3462: recN - DNA repair protein RecN (NCBI ptt file), at 3,607,978 to 3,609,636 recN SO3463: pgpA - phosphatidylglycerophosphatase A (NCBI ptt file), at 3,609,773 to 3,610,267 pgpA SO3464: thiL - thiamin-monophosphate kinase (NCBI ptt file), at 3,610,267 to 3,611,223 thiL Position (kb) 3607 3608 3609 3610Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3607.026 kb on + strand, within SO3461at 3607.240 kb on - strand, within SO3461at 3607.409 kb on + strand, within SO3461at 3607.498 kb on - strand, within SO3461at 3607.498 kb on - strand, within SO3461at 3607.539 kb on - strand, within SO3461at 3607.688 kb on + strand, within SO3461at 3607.696 kb on - strand, within SO3461at 3607.696 kb on - strand, within SO3461at 3607.748 kb on - strand, within SO3461at 3607.756 kb on + strandat 3607.764 kb on - strandat 3608.047 kb on - strandat 3608.099 kb on + strandat 3608.099 kb on + strandat 3608.107 kb on - strandat 3608.107 kb on - strandat 3608.107 kb on - strandat 3608.107 kb on - strandat 3608.107 kb on - strandat 3608.107 kb on - strandat 3608.208 kb on + strand, within recNat 3608.307 kb on + strand, within recNat 3608.314 kb on + strand, within recNat 3608.322 kb on - strand, within recNat 3608.383 kb on + strand, within recNat 3608.450 kb on - strand, within recNat 3608.489 kb on - strand, within recNat 3608.646 kb on + strand, within recNat 3608.655 kb on - strand, within recNat 3608.721 kb on + strand, within recNat 3608.750 kb on + strand, within recNat 3608.764 kb on - strand, within recNat 3608.855 kb on - strand, within recNat 3608.856 kb on - strand, within recNat 3608.890 kb on + strand, within recNat 3608.933 kb on - strand, within recNat 3609.078 kb on - strand, within recNat 3609.089 kb on + strand, within recNat 3609.097 kb on - strand, within recNat 3609.396 kb on - strand, within recNat 3609.413 kb on + strand, within recNat 3609.413 kb on + strand, within recNat 3609.413 kb on + strand, within recNat 3609.421 kb on - strand, within recNat 3609.421 kb on - strand, within recNat 3609.998 kb on - strand, within pgpAat 3610.027 kb on - strand, within pgpA

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Per-strain Table

Position Strand Gene LocusTag Fraction Lomefloxacin 0.0002 mM
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3,607,026 + SO3461 0.14 -0.5
3,607,240 - SO3461 0.37 -0.4
3,607,409 + SO3461 0.54 -0.0
3,607,498 - SO3461 0.63 -0.7
3,607,498 - SO3461 0.63 -0.1
3,607,539 - SO3461 0.68 +0.4
3,607,688 + SO3461 0.83 +0.4
3,607,696 - SO3461 0.84 -1.3
3,607,696 - SO3461 0.84 -0.4
3,607,748 - SO3461 0.89 +0.8
3,607,756 + -0.4
3,607,764 - -0.8
3,608,047 - -4.3
3,608,099 + -0.6
3,608,099 + -0.8
3,608,107 - -3.5
3,608,107 - -2.5
3,608,107 - -1.7
3,608,107 - -2.4
3,608,107 - -1.7
3,608,107 - -1.7
3,608,208 + recN SO3462 0.14 -3.4
3,608,307 + recN SO3462 0.20 -2.1
3,608,314 + recN SO3462 0.20 -2.9
3,608,322 - recN SO3462 0.21 -1.9
3,608,383 + recN SO3462 0.24 -1.5
3,608,450 - recN SO3462 0.28 -1.6
3,608,489 - recN SO3462 0.31 -1.6
3,608,646 + recN SO3462 0.40 -2.1
3,608,655 - recN SO3462 0.41 -3.6
3,608,721 + recN SO3462 0.45 -3.3
3,608,750 + recN SO3462 0.47 -1.9
3,608,764 - recN SO3462 0.47 -1.7
3,608,855 - recN SO3462 0.53 +0.7
3,608,856 - recN SO3462 0.53 -3.0
3,608,890 + recN SO3462 0.55 -3.6
3,608,933 - recN SO3462 0.58 -0.4
3,609,078 - recN SO3462 0.66 -2.1
3,609,089 + recN SO3462 0.67 -2.7
3,609,097 - recN SO3462 0.67 -1.6
3,609,396 - recN SO3462 0.85 -1.8
3,609,413 + recN SO3462 0.86 -0.1
3,609,413 + recN SO3462 0.86 -1.4
3,609,413 + recN SO3462 0.86 -0.9
3,609,421 - recN SO3462 0.87 -2.4
3,609,421 - recN SO3462 0.87 -2.2
3,609,998 - pgpA SO3463 0.45 -0.4
3,610,027 - pgpA SO3463 0.51 -1.6

Or see this region's nucleotide sequence