Experiment: Lomefloxacin 0.0002 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0895 and SO0896 are separated by 57 nucleotides SO0896 and dbpA are separated by 39 nucleotides dbpA and SO0898 are separated by 94 nucleotides SO0898 and SO0899 are separated by 58 nucleotides
SO0895: SO0895 - pirin family protein (NCBI ptt file), at 923,639 to 924,496
SO0895
SO0896: SO0896 - hypothetical protein (NCBI ptt file), at 924,554 to 924,769
SO0896
SO0897: dbpA - ATP-dependent RNA helicase DbpA (NCBI ptt file), at 924,809 to 926,185
dbpA
SO0898: SO0898 - conserved hypothetical protein (NCBI ptt file), at 926,280 to 926,807
SO0898
SO0899: SO0899 - glyoxalase family protein (NCBI ptt file), at 926,866 to 927,288
SO0899
Position (kb) 924
925
926
927 Strain fitness (log2 ratio) -2
-1
0
1 at 923.830 kb on - strand, within SO0895 at 923.831 kb on - strand, within SO0895 at 923.847 kb on + strand, within SO0895 at 923.847 kb on + strand, within SO0895 at 923.847 kb on + strand, within SO0895 at 923.847 kb on + strand, within SO0895 at 923.855 kb on - strand, within SO0895 at 923.959 kb on + strand, within SO0895 at 924.049 kb on - strand, within SO0895 at 924.077 kb on + strand, within SO0895 at 924.093 kb on - strand, within SO0895 at 924.093 kb on - strand, within SO0895 at 924.275 kb on + strand, within SO0895 at 924.276 kb on - strand, within SO0895 at 924.277 kb on - strand, within SO0895 at 924.304 kb on + strand, within SO0895 at 924.337 kb on + strand, within SO0895 at 924.337 kb on + strand, within SO0895 at 924.345 kb on - strand, within SO0895 at 924.345 kb on - strand, within SO0895 at 924.345 kb on - strand, within SO0895 at 924.379 kb on + strand, within SO0895 at 924.531 kb on + strand at 924.532 kb on + strand at 924.592 kb on - strand, within SO0896 at 924.774 kb on - strand at 924.892 kb on + strand at 924.925 kb on + strand at 924.940 kb on + strand at 924.970 kb on + strand, within dbpA at 924.976 kb on - strand, within dbpA at 925.023 kb on + strand, within dbpA at 925.023 kb on + strand, within dbpA at 925.023 kb on + strand, within dbpA at 925.023 kb on + strand, within dbpA at 925.031 kb on - strand, within dbpA at 925.031 kb on - strand, within dbpA at 925.031 kb on - strand, within dbpA at 925.188 kb on + strand, within dbpA at 925.196 kb on - strand, within dbpA at 925.196 kb on - strand, within dbpA at 925.321 kb on + strand, within dbpA at 925.399 kb on + strand, within dbpA at 925.407 kb on - strand, within dbpA at 925.414 kb on + strand, within dbpA at 925.414 kb on + strand, within dbpA at 925.422 kb on - strand, within dbpA at 925.422 kb on - strand, within dbpA at 925.556 kb on - strand, within dbpA at 925.592 kb on + strand, within dbpA at 925.626 kb on + strand, within dbpA at 925.626 kb on + strand, within dbpA at 925.626 kb on + strand, within dbpA at 925.634 kb on - strand, within dbpA at 925.691 kb on - strand, within dbpA at 925.834 kb on - strand, within dbpA at 925.834 kb on - strand, within dbpA at 925.852 kb on - strand, within dbpA at 925.887 kb on - strand, within dbpA at 925.917 kb on + strand, within dbpA at 925.925 kb on - strand, within dbpA at 925.925 kb on - strand, within dbpA at 925.935 kb on - strand, within dbpA at 926.083 kb on + strand at 926.101 kb on + strand at 926.108 kb on - strand at 926.146 kb on + strand at 926.152 kb on + strand at 926.152 kb on + strand at 926.158 kb on + strand at 926.266 kb on + strand at 926.443 kb on + strand, within SO0898 at 926.526 kb on + strand, within SO0898 at 926.534 kb on - strand, within SO0898 at 926.578 kb on - strand, within SO0898 at 926.581 kb on + strand, within SO0898 at 926.637 kb on + strand, within SO0898 at 926.645 kb on - strand, within SO0898 at 926.701 kb on - strand, within SO0898 at 926.775 kb on + strand at 926.905 kb on - strand at 927.093 kb on + strand, within SO0899 at 927.098 kb on + strand, within SO0899 at 927.098 kb on + strand, within SO0899 at 927.106 kb on - strand, within SO0899 at 927.106 kb on - strand, within SO0899 at 927.106 kb on - strand, within SO0899 at 927.107 kb on - strand, within SO0899 at 927.120 kb on - strand, within SO0899 at 927.126 kb on - strand, within SO0899 at 927.137 kb on + strand, within SO0899
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.0002 mM remove 923,830 - SO0895 0.22 +0.6 923,831 - SO0895 0.22 +1.0 923,847 + SO0895 0.24 +1.2 923,847 + SO0895 0.24 -0.0 923,847 + SO0895 0.24 -0.7 923,847 + SO0895 0.24 +0.1 923,855 - SO0895 0.25 +0.5 923,959 + SO0895 0.37 +0.0 924,049 - SO0895 0.48 +0.0 924,077 + SO0895 0.51 -0.7 924,093 - SO0895 0.53 -0.6 924,093 - SO0895 0.53 -0.5 924,275 + SO0895 0.74 +0.0 924,276 - SO0895 0.74 +0.4 924,277 - SO0895 0.74 -0.1 924,304 + SO0895 0.78 -0.0 924,337 + SO0895 0.81 -0.0 924,337 + SO0895 0.81 +0.3 924,345 - SO0895 0.82 -0.4 924,345 - SO0895 0.82 +1.2 924,345 - SO0895 0.82 +0.0 924,379 + SO0895 0.86 -0.1 924,531 + -0.1 924,532 + -0.6 924,592 - SO0896 0.18 +0.1 924,774 - -0.4 924,892 + +0.4 924,925 + -0.7 924,940 + +0.6 924,970 + dbpA SO0897 0.12 +0.3 924,976 - dbpA SO0897 0.12 -0.1 925,023 + dbpA SO0897 0.16 -0.3 925,023 + dbpA SO0897 0.16 +1.3 925,023 + dbpA SO0897 0.16 -0.8 925,023 + dbpA SO0897 0.16 -0.5 925,031 - dbpA SO0897 0.16 -0.3 925,031 - dbpA SO0897 0.16 +0.3 925,031 - dbpA SO0897 0.16 -0.1 925,188 + dbpA SO0897 0.28 +0.1 925,196 - dbpA SO0897 0.28 -2.1 925,196 - dbpA SO0897 0.28 -0.3 925,321 + dbpA SO0897 0.37 -0.0 925,399 + dbpA SO0897 0.43 +0.8 925,407 - dbpA SO0897 0.43 +1.3 925,414 + dbpA SO0897 0.44 +0.2 925,414 + dbpA SO0897 0.44 -0.2 925,422 - dbpA SO0897 0.45 -1.4 925,422 - dbpA SO0897 0.45 +0.5 925,556 - dbpA SO0897 0.54 -0.8 925,592 + dbpA SO0897 0.57 +1.7 925,626 + dbpA SO0897 0.59 +0.8 925,626 + dbpA SO0897 0.59 +1.1 925,626 + dbpA SO0897 0.59 +0.4 925,634 - dbpA SO0897 0.60 +1.6 925,691 - dbpA SO0897 0.64 +0.9 925,834 - dbpA SO0897 0.74 -0.3 925,834 - dbpA SO0897 0.74 -1.8 925,852 - dbpA SO0897 0.76 -0.5 925,887 - dbpA SO0897 0.78 +0.9 925,917 + dbpA SO0897 0.80 +0.6 925,925 - dbpA SO0897 0.81 -0.5 925,925 - dbpA SO0897 0.81 +0.5 925,935 - dbpA SO0897 0.82 +1.6 926,083 + +0.6 926,101 + -0.0 926,108 - -0.7 926,146 + -0.5 926,152 + +0.3 926,152 + +0.3 926,158 + +0.6 926,266 + -0.5 926,443 + SO0898 0.31 -0.5 926,526 + SO0898 0.47 -0.5 926,534 - SO0898 0.48 -0.5 926,578 - SO0898 0.56 -1.3 926,581 + SO0898 0.57 -1.7 926,637 + SO0898 0.68 -0.6 926,645 - SO0898 0.69 +0.2 926,701 - SO0898 0.80 -0.9 926,775 + -0.2 926,905 - -0.2 927,093 + SO0899 0.54 +0.3 927,098 + SO0899 0.55 +0.2 927,098 + SO0899 0.55 -0.9 927,106 - SO0899 0.57 +0.5 927,106 - SO0899 0.57 -1.4 927,106 - SO0899 0.57 +0.2 927,107 - SO0899 0.57 +0.2 927,120 - SO0899 0.60 -0.8 927,126 - SO0899 0.61 +0.1 927,137 + SO0899 0.64 -1.4
Or see this region's nucleotide sequence