Experiment: Lomefloxacin 0.0002 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fsxA and SO0699 are separated by 166 nucleotides SO0699 and SO0700 are separated by 43 nucleotides SO0700 and SO0701 are separated by 235 nucleotides SO0701 and SO0702 are separated by 3 nucleotides
SO0698: fsxA - fxsA protein (NCBI ptt file), at 716,549 to 717,112
fsxA
SO0699: SO0699 - hypothetical protein (NCBI ptt file), at 717,279 to 717,647
SO0699
SO0700: SO0700 - hypothetical protein (NCBI ptt file), at 717,691 to 717,855
SO0700
SO0701: SO0701 - transcriptional regulator, LysR family (NCBI ptt file), at 718,091 to 719,080
SO0701
SO0702: SO0702 - MATE efflux family protein (NCBI ptt file), at 719,084 to 720,442
SO0702
Position (kb) 718
719
720 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 717.099 kb on + strand at 717.100 kb on + strand at 717.107 kb on - strand at 717.127 kb on + strand at 717.188 kb on + strand at 717.309 kb on + strand at 717.331 kb on + strand, within SO0699 at 717.461 kb on + strand, within SO0699 at 717.461 kb on + strand, within SO0699 at 717.469 kb on - strand, within SO0699 at 717.469 kb on - strand, within SO0699 at 717.486 kb on + strand, within SO0699 at 717.541 kb on + strand, within SO0699 at 717.573 kb on + strand, within SO0699 at 717.625 kb on - strand at 717.667 kb on - strand at 717.749 kb on + strand, within SO0700 at 717.794 kb on + strand, within SO0700 at 717.850 kb on + strand at 717.963 kb on + strand at 717.963 kb on + strand at 717.971 kb on - strand at 718.010 kb on + strand at 718.216 kb on + strand, within SO0701 at 718.310 kb on - strand, within SO0701 at 718.357 kb on - strand, within SO0701 at 718.403 kb on - strand, within SO0701 at 718.403 kb on - strand, within SO0701 at 718.433 kb on + strand, within SO0701 at 718.441 kb on - strand, within SO0701 at 718.452 kb on + strand, within SO0701 at 718.470 kb on - strand, within SO0701 at 718.696 kb on + strand, within SO0701 at 718.823 kb on + strand, within SO0701 at 719.008 kb on - strand at 719.014 kb on + strand at 719.031 kb on + strand at 719.032 kb on + strand at 719.177 kb on - strand at 719.177 kb on - strand at 719.240 kb on + strand, within SO0702 at 719.260 kb on + strand, within SO0702 at 719.276 kb on + strand, within SO0702 at 719.386 kb on - strand, within SO0702 at 719.410 kb on - strand, within SO0702 at 719.853 kb on + strand, within SO0702 at 719.934 kb on + strand, within SO0702 at 720.000 kb on - strand, within SO0702 at 720.050 kb on - strand, within SO0702
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.0002 mM remove 717,099 + +0.5 717,100 + -0.0 717,107 - -0.1 717,127 + -0.3 717,188 + -1.3 717,309 + +0.4 717,331 + SO0699 0.14 +0.2 717,461 + SO0699 0.49 +0.5 717,461 + SO0699 0.49 +0.2 717,469 - SO0699 0.51 -0.1 717,469 - SO0699 0.51 -1.0 717,486 + SO0699 0.56 +0.1 717,541 + SO0699 0.71 +0.4 717,573 + SO0699 0.80 +0.5 717,625 - -0.7 717,667 - -0.3 717,749 + SO0700 0.35 -1.5 717,794 + SO0700 0.62 -1.7 717,850 + -1.3 717,963 + -1.7 717,963 + -0.2 717,971 - -0.3 718,010 + -1.7 718,216 + SO0701 0.13 -3.1 718,310 - SO0701 0.22 +0.7 718,357 - SO0701 0.27 -3.8 718,403 - SO0701 0.32 -4.2 718,403 - SO0701 0.32 -4.0 718,433 + SO0701 0.35 -1.9 718,441 - SO0701 0.35 -3.4 718,452 + SO0701 0.36 -5.5 718,470 - SO0701 0.38 -3.0 718,696 + SO0701 0.61 -4.6 718,823 + SO0701 0.74 -0.8 719,008 - -3.7 719,014 + +0.1 719,031 + -0.1 719,032 + -0.9 719,177 - -1.1 719,177 - -1.4 719,240 + SO0702 0.11 -1.3 719,260 + SO0702 0.13 -0.3 719,276 + SO0702 0.14 -0.4 719,386 - SO0702 0.22 -0.5 719,410 - SO0702 0.24 -0.7 719,853 + SO0702 0.57 +1.1 719,934 + SO0702 0.63 -1.7 720,000 - SO0702 0.67 +0.1 720,050 - SO0702 0.71 -0.9
Or see this region's nucleotide sequence