Strain Fitness in Shewanella oneidensis MR-1 around SO0688

Experiment: Lomefloxacin 0.0002 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0685 and SO0686 are separated by 118 nucleotidesSO0686 and SO0687 overlap by 8 nucleotidesSO0687 and SO0688 overlap by 4 nucleotidesSO0688 and SO0689 overlap by 4 nucleotidesSO0689 and SO0690 are separated by 142 nucleotides SO0685: SO0685 - ISSod1, transposase OrfA (NCBI ptt file), at 704,750 to 705,040 SO0685 SO0686: SO0686 - hypothetical protein (NCBI ptt file), at 705,159 to 705,623 SO0686 SO0687: SO0687 - hypothetical protein (NCBI ptt file), at 705,616 to 705,918 SO0687 SO0688: SO0688 - hypothetical protein (NCBI ptt file), at 705,915 to 707,714 SO0688 SO0689: SO0689 - hypothetical protein (NCBI ptt file), at 707,711 to 707,932 SO0689 SO0690: SO0690 - type II DNA modification methyltransferase, putative (NCBI ptt file), at 708,075 to 708,836 SO0690 Position (kb) 705 706 707 708Strain fitness (log2 ratio) -1 0 1 2 3at 705.093 kb on + strandat 705.093 kb on + strandat 705.093 kb on + strandat 705.093 kb on + strandat 705.093 kb on + strandat 705.093 kb on + strandat 705.093 kb on + strandat 705.110 kb on + strandat 705.110 kb on + strandat 705.110 kb on + strandat 705.116 kb on - strandat 705.116 kb on - strandat 705.116 kb on - strandat 705.118 kb on - strandat 705.213 kb on - strand, within SO0686at 705.246 kb on + strand, within SO0686at 705.257 kb on + strand, within SO0686at 705.257 kb on + strand, within SO0686at 705.265 kb on - strand, within SO0686at 705.265 kb on - strand, within SO0686at 705.265 kb on - strand, within SO0686at 705.265 kb on - strand, within SO0686at 705.467 kb on - strand, within SO0686at 705.614 kb on - strandat 705.618 kb on + strandat 705.656 kb on - strand, within SO0687at 705.678 kb on + strand, within SO0687at 705.678 kb on + strand, within SO0687at 705.678 kb on + strand, within SO0687at 705.685 kb on + strand, within SO0687at 705.685 kb on - strand, within SO0687at 705.693 kb on - strand, within SO0687at 705.695 kb on + strand, within SO0687at 705.858 kb on + strand, within SO0687at 705.866 kb on - strand, within SO0687at 705.911 kb on + strandat 705.949 kb on + strandat 705.952 kb on - strandat 705.969 kb on + strandat 705.975 kb on - strandat 705.980 kb on - strandat 706.000 kb on - strandat 706.005 kb on - strandat 706.013 kb on - strandat 706.014 kb on - strandat 706.015 kb on - strandat 706.083 kb on - strandat 706.083 kb on - strandat 706.083 kb on - strandat 706.178 kb on + strand, within SO0688at 706.208 kb on - strand, within SO0688at 706.210 kb on + strand, within SO0688at 706.234 kb on + strand, within SO0688at 706.234 kb on + strand, within SO0688at 706.242 kb on - strand, within SO0688at 706.249 kb on + strand, within SO0688at 706.251 kb on - strand, within SO0688at 706.257 kb on + strand, within SO0688at 706.257 kb on - strand, within SO0688at 706.258 kb on - strand, within SO0688at 706.391 kb on + strand, within SO0688at 706.426 kb on - strand, within SO0688at 706.426 kb on - strand, within SO0688at 706.426 kb on - strand, within SO0688at 706.588 kb on + strand, within SO0688at 706.596 kb on - strand, within SO0688at 706.596 kb on - strand, within SO0688at 706.596 kb on - strand, within SO0688at 706.642 kb on + strand, within SO0688at 706.642 kb on + strand, within SO0688at 706.642 kb on + strand, within SO0688at 706.747 kb on - strand, within SO0688at 706.854 kb on + strand, within SO0688at 706.920 kb on - strand, within SO0688at 706.953 kb on - strand, within SO0688at 706.969 kb on + strand, within SO0688at 706.969 kb on + strand, within SO0688at 706.969 kb on + strand, within SO0688at 706.977 kb on - strand, within SO0688at 707.068 kb on - strand, within SO0688at 707.068 kb on - strand, within SO0688at 707.174 kb on + strand, within SO0688at 707.185 kb on + strand, within SO0688at 707.243 kb on + strand, within SO0688at 707.353 kb on - strand, within SO0688at 707.411 kb on + strand, within SO0688at 707.435 kb on + strand, within SO0688at 707.481 kb on - strand, within SO0688at 707.486 kb on - strand, within SO0688at 707.526 kb on - strand, within SO0688at 707.526 kb on - strand, within SO0688at 707.526 kb on - strand, within SO0688at 707.591 kb on + strandat 707.591 kb on + strandat 707.591 kb on + strandat 707.591 kb on + strandat 707.591 kb on + strandat 707.597 kb on - strandat 707.599 kb on - strandat 707.599 kb on - strandat 707.599 kb on - strandat 707.599 kb on - strandat 707.599 kb on - strandat 707.599 kb on - strandat 707.599 kb on - strandat 707.623 kb on + strandat 707.639 kb on + strandat 707.646 kb on + strandat 707.646 kb on + strandat 707.651 kb on + strandat 707.726 kb on - strandat 707.746 kb on - strand, within SO0689at 707.748 kb on - strand, within SO0689at 707.774 kb on + strand, within SO0689at 707.782 kb on - strand, within SO0689at 707.804 kb on - strand, within SO0689at 707.824 kb on - strand, within SO0689at 707.983 kb on + strandat 707.991 kb on - strandat 707.991 kb on - strandat 707.991 kb on - strandat 707.991 kb on - strandat 708.002 kb on + strandat 708.002 kb on + strandat 708.010 kb on - strandat 708.010 kb on - strandat 708.110 kb on + strandat 708.150 kb on + strandat 708.160 kb on + strand, within SO0690at 708.167 kb on + strand, within SO0690at 708.170 kb on + strand, within SO0690at 708.173 kb on + strand, within SO0690at 708.212 kb on - strand, within SO0690at 708.212 kb on - strand, within SO0690at 708.254 kb on + strand, within SO0690at 708.277 kb on + strand, within SO0690at 708.299 kb on + strand, within SO0690at 708.299 kb on + strand, within SO0690at 708.309 kb on + strand, within SO0690at 708.317 kb on - strand, within SO0690at 708.319 kb on + strand, within SO0690at 708.327 kb on - strand, within SO0690at 708.327 kb on - strand, within SO0690at 708.361 kb on - strand, within SO0690at 708.361 kb on - strand, within SO0690at 708.361 kb on - strand, within SO0690at 708.361 kb on - strand, within SO0690at 708.432 kb on + strand, within SO0690at 708.461 kb on - strand, within SO0690at 708.468 kb on + strand, within SO0690at 708.468 kb on + strand, within SO0690at 708.468 kb on + strand, within SO0690at 708.476 kb on - strand, within SO0690at 708.476 kb on - strand, within SO0690at 708.497 kb on + strand, within SO0690at 708.497 kb on + strand, within SO0690at 708.559 kb on + strand, within SO0690at 708.567 kb on - strand, within SO0690at 708.567 kb on - strand, within SO0690at 708.578 kb on + strand, within SO0690at 708.580 kb on - strand, within SO0690at 708.603 kb on - strand, within SO0690at 708.624 kb on + strand, within SO0690at 708.632 kb on - strand, within SO0690at 708.638 kb on + strand, within SO0690at 708.646 kb on - strand, within SO0690at 708.682 kb on - strand, within SO0690at 708.696 kb on + strand, within SO0690at 708.714 kb on - strand, within SO0690at 708.714 kb on - strand, within SO0690

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Per-strain Table

Position Strand Gene LocusTag Fraction Lomefloxacin 0.0002 mM
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705,093 + +0.2
705,093 + +0.2
705,093 + +0.5
705,093 + -0.1
705,093 + -0.2
705,093 + -0.0
705,093 + -0.7
705,110 + +0.8
705,110 + -0.3
705,110 + -0.0
705,116 - +0.1
705,116 - -0.1
705,116 - +3.2
705,118 - +0.1
705,213 - SO0686 0.12 -0.5
705,246 + SO0686 0.19 +1.1
705,257 + SO0686 0.21 +1.2
705,257 + SO0686 0.21 +1.1
705,265 - SO0686 0.23 +0.7
705,265 - SO0686 0.23 +0.5
705,265 - SO0686 0.23 +0.9
705,265 - SO0686 0.23 +0.0
705,467 - SO0686 0.66 +2.2
705,614 - -0.2
705,618 + -0.7
705,656 - SO0687 0.13 +0.3
705,678 + SO0687 0.20 -0.1
705,678 + SO0687 0.20 +0.2
705,678 + SO0687 0.20 -0.5
705,685 + SO0687 0.23 +0.3
705,685 - SO0687 0.23 +0.1
705,693 - SO0687 0.25 -0.4
705,695 + SO0687 0.26 -0.1
705,858 + SO0687 0.80 +0.2
705,866 - SO0687 0.83 -0.2
705,911 + -0.1
705,949 + +0.3
705,952 - -1.2
705,969 + +0.2
705,975 - +0.5
705,980 - +0.2
706,000 - +0.5
706,005 - +0.6
706,013 - -0.5
706,014 - -0.0
706,015 - +0.0
706,083 - +0.7
706,083 - -0.8
706,083 - -0.1
706,178 + SO0688 0.15 +0.6
706,208 - SO0688 0.16 +0.3
706,210 + SO0688 0.16 -0.5
706,234 + SO0688 0.18 -0.3
706,234 + SO0688 0.18 +0.3
706,242 - SO0688 0.18 +0.5
706,249 + SO0688 0.19 -0.1
706,251 - SO0688 0.19 +0.8
706,257 + SO0688 0.19 +1.2
706,257 - SO0688 0.19 +0.3
706,258 - SO0688 0.19 +0.9
706,391 + SO0688 0.26 +0.7
706,426 - SO0688 0.28 -0.6
706,426 - SO0688 0.28 +0.0
706,426 - SO0688 0.28 +0.6
706,588 + SO0688 0.37 +0.3
706,596 - SO0688 0.38 +0.6
706,596 - SO0688 0.38 +0.2
706,596 - SO0688 0.38 +1.1
706,642 + SO0688 0.40 +0.1
706,642 + SO0688 0.40 -0.3
706,642 + SO0688 0.40 +0.2
706,747 - SO0688 0.46 +0.6
706,854 + SO0688 0.52 -1.4
706,920 - SO0688 0.56 +0.2
706,953 - SO0688 0.58 +0.1
706,969 + SO0688 0.59 +0.1
706,969 + SO0688 0.59 +1.3
706,969 + SO0688 0.59 +0.1
706,977 - SO0688 0.59 +0.3
707,068 - SO0688 0.64 +1.5
707,068 - SO0688 0.64 -0.1
707,174 + SO0688 0.70 +0.0
707,185 + SO0688 0.71 +0.5
707,243 + SO0688 0.74 +0.7
707,353 - SO0688 0.80 -0.2
707,411 + SO0688 0.83 +0.5
707,435 + SO0688 0.84 +0.4
707,481 - SO0688 0.87 +0.1
707,486 - SO0688 0.87 +0.7
707,526 - SO0688 0.90 -0.4
707,526 - SO0688 0.90 -0.3
707,526 - SO0688 0.90 +1.4
707,591 + +1.0
707,591 + -0.2
707,591 + -0.7
707,591 + +0.7
707,591 + +0.3
707,597 - +1.4
707,599 - +0.2
707,599 - +0.1
707,599 - -0.4
707,599 - +0.5
707,599 - -0.3
707,599 - +0.4
707,599 - +0.8
707,623 + -0.5
707,639 + -0.3
707,646 + +0.8
707,646 + +0.2
707,651 + +1.1
707,726 - -0.3
707,746 - SO0689 0.16 +0.4
707,748 - SO0689 0.17 -0.3
707,774 + SO0689 0.28 +0.5
707,782 - SO0689 0.32 -1.2
707,804 - SO0689 0.42 +0.4
707,824 - SO0689 0.51 -0.7
707,983 + +0.7
707,991 - +1.2
707,991 - -0.1
707,991 - +0.1
707,991 - +0.4
708,002 + -0.5
708,002 + -0.4
708,010 - +0.1
708,010 - -0.3
708,110 + +0.2
708,150 + +2.7
708,160 + SO0690 0.11 +0.6
708,167 + SO0690 0.12 -1.0
708,170 + SO0690 0.12 +0.8
708,173 + SO0690 0.13 +0.6
708,212 - SO0690 0.18 +0.5
708,212 - SO0690 0.18 +0.6
708,254 + SO0690 0.23 +0.4
708,277 + SO0690 0.27 +0.7
708,299 + SO0690 0.29 -0.1
708,299 + SO0690 0.29 +0.5
708,309 + SO0690 0.31 +1.2
708,317 - SO0690 0.32 +0.5
708,319 + SO0690 0.32 -1.7
708,327 - SO0690 0.33 -0.2
708,327 - SO0690 0.33 +0.8
708,361 - SO0690 0.38 +0.2
708,361 - SO0690 0.38 +0.1
708,361 - SO0690 0.38 +2.2
708,361 - SO0690 0.38 -0.5
708,432 + SO0690 0.47 -0.6
708,461 - SO0690 0.51 +0.4
708,468 + SO0690 0.52 +0.1
708,468 + SO0690 0.52 +0.1
708,468 + SO0690 0.52 +0.7
708,476 - SO0690 0.53 +0.5
708,476 - SO0690 0.53 -1.2
708,497 + SO0690 0.55 +0.7
708,497 + SO0690 0.55 +0.3
708,559 + SO0690 0.64 +0.4
708,567 - SO0690 0.65 -0.7
708,567 - SO0690 0.65 +0.3
708,578 + SO0690 0.66 +1.7
708,580 - SO0690 0.66 +0.0
708,603 - SO0690 0.69 +0.2
708,624 + SO0690 0.72 +0.8
708,632 - SO0690 0.73 -0.3
708,638 + SO0690 0.74 +0.3
708,646 - SO0690 0.75 +0.8
708,682 - SO0690 0.80 +0.8
708,696 + SO0690 0.81 +0.8
708,714 - SO0690 0.84 +0.7
708,714 - SO0690 0.84 +0.1

Or see this region's nucleotide sequence