Experiment: Lomefloxacin 0.0002 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt uvrD and ubiA are separated by 134 nucleotides ubiA and SO0468.1 are separated by 95 nucleotides SO0468.1 and SO0470 are separated by 310 nucleotides
SO0467: uvrD - DNA helicase II (NCBI ptt file), at 490,777 to 492,945
uvrD
SO0468: ubiA - 4-hydroxybenzoate polyprenyl transferase (NCBI ptt file), at 493,080 to 493,940
ubiA
SO0468.1: SO0468.1 - hypothetical protein (NCBI ptt file), at 494,036 to 494,413
SO0468.1
SO0470: SO0470 - hypothetical protein (NCBI ptt file), at 494,724 to 495,140
SO0470
Position (kb) 493
494 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 492.140 kb on + strand, within uvrD at 492.329 kb on + strand, within uvrD at 492.337 kb on - strand, within uvrD at 492.348 kb on - strand, within uvrD at 492.409 kb on + strand, within uvrD at 492.409 kb on + strand, within uvrD at 492.409 kb on + strand, within uvrD at 492.409 kb on + strand, within uvrD at 492.409 kb on + strand, within uvrD at 492.417 kb on - strand, within uvrD at 492.497 kb on + strand, within uvrD at 492.580 kb on + strand, within uvrD at 492.580 kb on + strand, within uvrD at 492.595 kb on - strand, within uvrD at 492.731 kb on - strand at 492.731 kb on - strand at 492.800 kb on + strand at 492.929 kb on + strand at 492.947 kb on - strand at 492.947 kb on - strand at 493.005 kb on + strand at 493.012 kb on + strand at 493.934 kb on + strand at 493.943 kb on + strand at 493.958 kb on - strand at 493.958 kb on - strand at 493.996 kb on + strand at 493.996 kb on + strand at 493.996 kb on + strand at 493.996 kb on + strand at 494.004 kb on - strand at 494.004 kb on - strand at 494.004 kb on - strand at 494.004 kb on - strand at 494.020 kb on + strand at 494.020 kb on + strand at 494.020 kb on + strand at 494.020 kb on + strand at 494.028 kb on - strand at 494.028 kb on - strand at 494.028 kb on - strand at 494.028 kb on - strand at 494.028 kb on - strand at 494.034 kb on + strand at 494.042 kb on - strand at 494.042 kb on - strand at 494.052 kb on + strand at 494.099 kb on - strand, within SO0468.1 at 494.126 kb on + strand, within SO0468.1 at 494.182 kb on + strand, within SO0468.1 at 494.235 kb on - strand, within SO0468.1 at 494.309 kb on + strand, within SO0468.1 at 494.319 kb on + strand, within SO0468.1 at 494.319 kb on + strand, within SO0468.1 at 494.319 kb on + strand, within SO0468.1 at 494.322 kb on - strand, within SO0468.1 at 494.327 kb on - strand, within SO0468.1 at 494.327 kb on - strand, within SO0468.1 at 494.327 kb on - strand, within SO0468.1 at 494.337 kb on + strand, within SO0468.1 at 494.345 kb on - strand, within SO0468.1 at 494.352 kb on + strand, within SO0468.1 at 494.360 kb on - strand, within SO0468.1 at 494.361 kb on + strand, within SO0468.1 at 494.369 kb on - strand, within SO0468.1 at 494.383 kb on + strand at 494.384 kb on + strand at 494.384 kb on - strand at 494.385 kb on + strand at 494.385 kb on - strand at 494.394 kb on - strand at 494.401 kb on + strand at 494.401 kb on + strand at 494.401 kb on + strand at 494.401 kb on + strand at 494.401 kb on + strand at 494.401 kb on + strand at 494.401 kb on + strand at 494.401 kb on + strand at 494.401 kb on + strand at 494.401 kb on + strand at 494.401 kb on + strand at 494.401 kb on + strand at 494.401 kb on + strand at 494.401 kb on + strand at 494.401 kb on + strand at 494.401 kb on + strand at 494.401 kb on + strand at 494.401 kb on + strand at 494.401 kb on + strand at 494.401 kb on + strand at 494.401 kb on + strand at 494.401 kb on + strand at 494.401 kb on + strand at 494.401 kb on + strand at 494.401 kb on + strand at 494.401 kb on + strand at 494.401 kb on + strand at 494.401 kb on + strand at 494.401 kb on + strand at 494.401 kb on + strand at 494.409 kb on - strand at 494.409 kb on - strand at 494.409 kb on - strand at 494.409 kb on - strand at 494.409 kb on - strand at 494.409 kb on - strand at 494.409 kb on - strand at 494.409 kb on - strand at 494.409 kb on - strand at 494.409 kb on - strand at 494.409 kb on - strand at 494.409 kb on - strand at 494.409 kb on - strand at 494.409 kb on - strand at 494.409 kb on - strand at 494.409 kb on - strand at 494.409 kb on - strand at 494.409 kb on - strand at 494.409 kb on - strand at 494.409 kb on - strand at 494.409 kb on - strand at 494.409 kb on - strand at 494.409 kb on - strand at 494.409 kb on - strand at 494.409 kb on - strand at 494.409 kb on - strand at 494.409 kb on - strand at 494.409 kb on - strand at 494.409 kb on - strand at 494.409 kb on - strand at 494.409 kb on - strand at 494.409 kb on - strand at 494.409 kb on - strand at 494.409 kb on - strand at 494.409 kb on - strand at 494.409 kb on - strand at 494.409 kb on - strand at 494.409 kb on - strand at 494.409 kb on - strand at 494.409 kb on - strand at 494.409 kb on - strand at 494.410 kb on + strand at 494.418 kb on - strand at 494.418 kb on - strand at 494.423 kb on - strand at 494.425 kb on - strand at 494.438 kb on - strand at 494.448 kb on + strand at 494.451 kb on - strand at 494.482 kb on + strand at 494.482 kb on + strand at 494.482 kb on + strand at 494.508 kb on + strand at 494.517 kb on + strand at 494.535 kb on - strand at 494.554 kb on - strand at 494.676 kb on + strand at 494.676 kb on + strand at 494.688 kb on + strand at 494.701 kb on + strand at 494.712 kb on + strand at 494.715 kb on - strand at 494.720 kb on + strand at 494.726 kb on + strand at 494.733 kb on + strand at 494.760 kb on - strand at 494.769 kb on - strand, within SO0470 at 494.772 kb on + strand, within SO0470 at 494.772 kb on + strand, within SO0470 at 494.772 kb on + strand, within SO0470 at 494.772 kb on + strand, within SO0470 at 494.772 kb on + strand, within SO0470 at 494.772 kb on + strand, within SO0470 at 494.780 kb on + strand, within SO0470 at 494.780 kb on - strand, within SO0470 at 494.780 kb on - strand, within SO0470 at 494.780 kb on - strand, within SO0470 at 494.780 kb on - strand, within SO0470 at 494.780 kb on - strand, within SO0470 at 494.780 kb on - strand, within SO0470 at 494.780 kb on - strand, within SO0470 at 494.780 kb on - strand, within SO0470 at 494.799 kb on + strand, within SO0470 at 494.801 kb on + strand, within SO0470 at 494.802 kb on + strand, within SO0470 at 494.807 kb on + strand, within SO0470 at 494.807 kb on + strand, within SO0470 at 494.807 kb on + strand, within SO0470 at 494.809 kb on - strand, within SO0470 at 494.815 kb on - strand, within SO0470 at 494.825 kb on - strand, within SO0470 at 494.829 kb on + strand, within SO0470 at 494.829 kb on + strand, within SO0470 at 494.829 kb on + strand, within SO0470 at 494.829 kb on + strand, within SO0470 at 494.837 kb on - strand, within SO0470 at 494.837 kb on - strand, within SO0470 at 494.837 kb on - strand, within SO0470 at 494.837 kb on - strand, within SO0470 at 494.889 kb on + strand, within SO0470 at 494.889 kb on + strand, within SO0470 at 494.889 kb on + strand, within SO0470 at 494.889 kb on + strand, within SO0470 at 494.890 kb on - strand, within SO0470 at 494.892 kb on - strand, within SO0470 at 494.897 kb on - strand, within SO0470 at 494.897 kb on - strand, within SO0470 at 494.910 kb on + strand, within SO0470 at 494.912 kb on - strand, within SO0470 at 494.915 kb on + strand, within SO0470 at 494.918 kb on - strand, within SO0470 at 494.918 kb on - strand, within SO0470 at 494.923 kb on - strand, within SO0470 at 494.923 kb on - strand, within SO0470 at 494.923 kb on - strand, within SO0470
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.0002 mM remove 492,140 + uvrD SO0467 0.63 -2.6 492,329 + uvrD SO0467 0.72 -3.6 492,337 - uvrD SO0467 0.72 -3.8 492,348 - uvrD SO0467 0.72 -1.9 492,409 + uvrD SO0467 0.75 -2.3 492,409 + uvrD SO0467 0.75 -0.9 492,409 + uvrD SO0467 0.75 -2.7 492,409 + uvrD SO0467 0.75 -3.6 492,409 + uvrD SO0467 0.75 -2.7 492,417 - uvrD SO0467 0.76 -4.3 492,497 + uvrD SO0467 0.79 -2.3 492,580 + uvrD SO0467 0.83 -3.0 492,580 + uvrD SO0467 0.83 -2.6 492,595 - uvrD SO0467 0.84 -1.1 492,731 - -0.7 492,731 - -1.0 492,800 + +0.7 492,929 + -0.2 492,947 - +0.1 492,947 - -0.5 493,005 + +0.3 493,012 + -0.3 493,934 + +0.2 493,943 + +0.2 493,958 - +0.5 493,958 - -0.1 493,996 + +0.1 493,996 + +0.5 493,996 + +0.6 493,996 + +0.2 494,004 - -0.6 494,004 - -0.1 494,004 - -0.4 494,004 - -0.1 494,020 + -0.1 494,020 + +0.6 494,020 + -0.9 494,020 + +0.1 494,028 - -1.0 494,028 - -1.2 494,028 - +1.1 494,028 - -0.7 494,028 - +0.4 494,034 + +0.1 494,042 - +0.7 494,042 - -1.0 494,052 + -0.6 494,099 - SO0468.1 0.17 +0.4 494,126 + SO0468.1 0.24 +0.6 494,182 + SO0468.1 0.39 -0.7 494,235 - SO0468.1 0.53 -1.2 494,309 + SO0468.1 0.72 +0.3 494,319 + SO0468.1 0.75 +0.2 494,319 + SO0468.1 0.75 +0.4 494,319 + SO0468.1 0.75 -0.0 494,322 - SO0468.1 0.76 +0.3 494,327 - SO0468.1 0.77 -0.4 494,327 - SO0468.1 0.77 -0.6 494,327 - SO0468.1 0.77 -1.7 494,337 + SO0468.1 0.80 -0.6 494,345 - SO0468.1 0.82 -0.8 494,352 + SO0468.1 0.84 +0.4 494,360 - SO0468.1 0.86 -0.6 494,361 + SO0468.1 0.86 +0.0 494,369 - SO0468.1 0.88 -0.5 494,383 + -0.0 494,384 + +0.1 494,384 - -0.4 494,385 + -0.3 494,385 - -0.6 494,394 - +1.7 494,401 + +0.5 494,401 + -0.9 494,401 + -0.5 494,401 + -0.4 494,401 + -0.5 494,401 + +0.1 494,401 + -0.7 494,401 + +0.0 494,401 + -0.4 494,401 + +0.4 494,401 + +1.0 494,401 + -0.3 494,401 + +0.2 494,401 + -0.3 494,401 + +0.4 494,401 + -0.9 494,401 + +0.5 494,401 + +1.7 494,401 + -0.2 494,401 + +0.6 494,401 + +0.5 494,401 + +0.3 494,401 + -0.2 494,401 + -0.7 494,401 + +0.4 494,401 + +1.3 494,401 + -0.7 494,401 + -0.2 494,401 + +0.4 494,401 + +0.3 494,409 - -0.7 494,409 - -1.1 494,409 - +0.3 494,409 - +0.3 494,409 - -0.4 494,409 - -0.7 494,409 - -2.8 494,409 - -0.8 494,409 - -1.0 494,409 - +0.3 494,409 - -1.6 494,409 - -0.7 494,409 - -0.9 494,409 - -0.4 494,409 - +0.5 494,409 - -1.7 494,409 - -0.2 494,409 - +0.8 494,409 - -0.1 494,409 - -0.9 494,409 - -1.0 494,409 - -0.1 494,409 - -1.3 494,409 - +0.1 494,409 - -1.5 494,409 - -0.8 494,409 - -0.4 494,409 - -0.4 494,409 - -0.1 494,409 - -0.5 494,409 - +1.0 494,409 - -0.5 494,409 - -1.1 494,409 - -1.1 494,409 - +0.2 494,409 - -0.8 494,409 - +0.0 494,409 - -0.5 494,409 - -0.4 494,409 - +0.4 494,409 - -0.1 494,410 + +0.0 494,418 - +0.3 494,418 - -0.3 494,423 - -1.1 494,425 - +0.6 494,438 - -0.9 494,448 + +1.3 494,451 - +0.3 494,482 + -1.2 494,482 + -0.0 494,482 + -0.4 494,508 + -0.4 494,517 + +0.0 494,535 - +0.6 494,554 - +0.4 494,676 + -0.1 494,676 + -0.6 494,688 + +0.4 494,701 + -0.0 494,712 + -0.1 494,715 - -1.0 494,720 + +0.2 494,726 + +0.2 494,733 + +0.8 494,760 - +0.7 494,769 - SO0470 0.11 -0.7 494,772 + SO0470 0.12 -0.5 494,772 + SO0470 0.12 -0.4 494,772 + SO0470 0.12 +1.6 494,772 + SO0470 0.12 +0.4 494,772 + SO0470 0.12 -1.0 494,772 + SO0470 0.12 +1.1 494,780 + SO0470 0.13 -0.1 494,780 - SO0470 0.13 -0.2 494,780 - SO0470 0.13 -1.2 494,780 - SO0470 0.13 -0.7 494,780 - SO0470 0.13 -1.0 494,780 - SO0470 0.13 -0.2 494,780 - SO0470 0.13 +0.1 494,780 - SO0470 0.13 +0.5 494,780 - SO0470 0.13 -0.5 494,799 + SO0470 0.18 +0.3 494,801 + SO0470 0.18 -0.1 494,802 + SO0470 0.19 -1.0 494,807 + SO0470 0.20 -0.9 494,807 + SO0470 0.20 -0.1 494,807 + SO0470 0.20 -0.3 494,809 - SO0470 0.20 +0.4 494,815 - SO0470 0.22 -0.3 494,825 - SO0470 0.24 +0.5 494,829 + SO0470 0.25 +0.6 494,829 + SO0470 0.25 -0.5 494,829 + SO0470 0.25 +0.6 494,829 + SO0470 0.25 +0.0 494,837 - SO0470 0.27 +0.6 494,837 - SO0470 0.27 +0.6 494,837 - SO0470 0.27 +0.5 494,837 - SO0470 0.27 -0.3 494,889 + SO0470 0.40 +0.7 494,889 + SO0470 0.40 -1.3 494,889 + SO0470 0.40 -0.3 494,889 + SO0470 0.40 -0.6 494,890 - SO0470 0.40 +0.0 494,892 - SO0470 0.40 -0.5 494,897 - SO0470 0.41 -0.3 494,897 - SO0470 0.41 +0.2 494,910 + SO0470 0.45 +0.9 494,912 - SO0470 0.45 -0.5 494,915 + SO0470 0.46 -0.9 494,918 - SO0470 0.47 -0.1 494,918 - SO0470 0.47 -0.1 494,923 - SO0470 0.48 -0.5 494,923 - SO0470 0.48 +0.6 494,923 - SO0470 0.48 -1.2
Or see this region's nucleotide sequence