Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c09510

Experiment: m.b. Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c09490 and PGA1_c09500 overlap by 4 nucleotidesPGA1_c09500 and PGA1_c09510 overlap by 4 nucleotidesPGA1_c09510 and PGA1_c09520 are separated by 15 nucleotides PGA1_c09490: PGA1_c09490 - S-adenosyl-L-methionine-dependent methyltransferase MraW, at 972,478 to 973,485 _c09490 PGA1_c09500: PGA1_c09500 - hypothetical protein, at 973,482 to 973,856 _c09500 PGA1_c09510: PGA1_c09510 - putative peptidoglycan synthetase, at 973,853 to 975,640 _c09510 PGA1_c09520: PGA1_c09520 - UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase MurE, at 975,656 to 977,140 _c09520 Position (kb) 973 974 975 976Strain fitness (log2 ratio) -2 -1 0 1 2at 973.471 kb on + strandat 975.617 kb on + strandat 975.625 kb on - strandat 975.625 kb on - strandat 975.626 kb on - strandat 975.639 kb on + strandat 975.653 kb on + strandat 975.653 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM
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973,471 + +1.0
975,617 + +0.0
975,625 - +0.2
975,625 - -0.4
975,626 - -0.8
975,639 + +0.7
975,653 + +1.8
975,653 + -2.2

Or see this region's nucleotide sequence