Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07340

Experiment: m.b. Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c07330 and PGA1_c07340 are separated by 8 nucleotidesPGA1_c07340 and PGA1_c07350 overlap by 11 nucleotidesPGA1_c07350 and PGA1_c07360 overlap by 4 nucleotides PGA1_c07330: PGA1_c07330 - beta-galactosidase 1, at 754,733 to 756,652 _c07330 PGA1_c07340: PGA1_c07340 - Gluconolactonase, at 756,661 to 757,533 _c07340 PGA1_c07350: PGA1_c07350 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase DgoA, at 757,523 to 758,134 _c07350 PGA1_c07360: PGA1_c07360 - 2-dehydro-3-deoxygalactonokinase DgoK, at 758,131 to 759,108 _c07360 Position (kb) 756 757 758Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 755.667 kb on + strand, within PGA1_c07330at 755.692 kb on - strand, within PGA1_c07330at 755.739 kb on + strand, within PGA1_c07330at 755.811 kb on - strand, within PGA1_c07330at 755.815 kb on + strand, within PGA1_c07330at 755.875 kb on - strand, within PGA1_c07330at 755.883 kb on + strand, within PGA1_c07330at 755.883 kb on + strand, within PGA1_c07330at 755.883 kb on + strand, within PGA1_c07330at 755.891 kb on - strand, within PGA1_c07330at 755.901 kb on - strand, within PGA1_c07330at 756.013 kb on - strand, within PGA1_c07330at 756.038 kb on - strand, within PGA1_c07330at 756.040 kb on - strand, within PGA1_c07330at 756.061 kb on - strand, within PGA1_c07330at 756.107 kb on + strand, within PGA1_c07330at 756.107 kb on + strand, within PGA1_c07330at 756.115 kb on - strand, within PGA1_c07330at 756.151 kb on + strand, within PGA1_c07330at 756.159 kb on - strand, within PGA1_c07330at 756.163 kb on + strand, within PGA1_c07330at 756.164 kb on + strand, within PGA1_c07330at 756.223 kb on - strand, within PGA1_c07330at 756.298 kb on + strand, within PGA1_c07330at 756.298 kb on + strand, within PGA1_c07330at 756.301 kb on + strand, within PGA1_c07330at 756.343 kb on + strand, within PGA1_c07330at 756.351 kb on - strand, within PGA1_c07330at 756.351 kb on - strand, within PGA1_c07330at 756.418 kb on + strand, within PGA1_c07330at 756.432 kb on - strand, within PGA1_c07330at 756.481 kb on + strandat 756.557 kb on + strandat 756.557 kb on + strandat 756.557 kb on + strandat 756.599 kb on + strandat 756.624 kb on - strandat 756.640 kb on - strandat 756.640 kb on - strandat 756.640 kb on - strandat 756.647 kb on - strandat 756.657 kb on - strandat 756.715 kb on + strandat 756.715 kb on + strandat 756.715 kb on + strandat 756.735 kb on + strandat 756.823 kb on - strand, within PGA1_c07340at 756.861 kb on - strand, within PGA1_c07340at 756.888 kb on - strand, within PGA1_c07340at 757.033 kb on - strand, within PGA1_c07340at 757.222 kb on + strand, within PGA1_c07340at 757.230 kb on - strand, within PGA1_c07340at 757.230 kb on - strand, within PGA1_c07340at 757.231 kb on - strand, within PGA1_c07340at 757.258 kb on + strand, within PGA1_c07340at 757.307 kb on + strand, within PGA1_c07340at 757.315 kb on - strand, within PGA1_c07340at 757.320 kb on - strand, within PGA1_c07340at 757.320 kb on - strand, within PGA1_c07340at 757.320 kb on - strand, within PGA1_c07340at 757.346 kb on + strand, within PGA1_c07340at 757.381 kb on + strand, within PGA1_c07340at 757.424 kb on - strand, within PGA1_c07340at 757.495 kb on - strandat 757.591 kb on - strand, within PGA1_c07350at 757.610 kb on - strand, within PGA1_c07350at 757.610 kb on - strand, within PGA1_c07350at 757.689 kb on + strand, within PGA1_c07350at 757.798 kb on + strand, within PGA1_c07350at 757.868 kb on - strand, within PGA1_c07350at 757.940 kb on + strand, within PGA1_c07350at 757.946 kb on - strand, within PGA1_c07350at 757.946 kb on - strand, within PGA1_c07350at 757.959 kb on - strand, within PGA1_c07350at 758.044 kb on + strand, within PGA1_c07350at 758.110 kb on + strandat 758.110 kb on + strandat 758.176 kb on - strandat 758.192 kb on - strandat 758.206 kb on + strandat 758.211 kb on + strandat 758.259 kb on + strand, within PGA1_c07360at 758.259 kb on + strand, within PGA1_c07360at 758.263 kb on + strand, within PGA1_c07360at 758.354 kb on + strand, within PGA1_c07360at 758.354 kb on + strand, within PGA1_c07360at 758.360 kb on - strand, within PGA1_c07360at 758.409 kb on + strand, within PGA1_c07360at 758.427 kb on - strand, within PGA1_c07360

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM
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755,667 + PGA1_c07330 0.49 -1.8
755,692 - PGA1_c07330 0.50 +1.0
755,739 + PGA1_c07330 0.52 +1.7
755,811 - PGA1_c07330 0.56 -0.2
755,815 + PGA1_c07330 0.56 +1.2
755,875 - PGA1_c07330 0.59 -2.1
755,883 + PGA1_c07330 0.60 +1.2
755,883 + PGA1_c07330 0.60 +0.2
755,883 + PGA1_c07330 0.60 -0.9
755,891 - PGA1_c07330 0.60 +1.0
755,901 - PGA1_c07330 0.61 -0.9
756,013 - PGA1_c07330 0.67 -0.5
756,038 - PGA1_c07330 0.68 -0.1
756,040 - PGA1_c07330 0.68 +0.9
756,061 - PGA1_c07330 0.69 +0.0
756,107 + PGA1_c07330 0.72 -0.7
756,107 + PGA1_c07330 0.72 +0.4
756,115 - PGA1_c07330 0.72 -0.9
756,151 + PGA1_c07330 0.74 +0.5
756,159 - PGA1_c07330 0.74 -0.9
756,163 + PGA1_c07330 0.74 +0.8
756,164 + PGA1_c07330 0.75 -1.8
756,223 - PGA1_c07330 0.78 -0.0
756,298 + PGA1_c07330 0.82 +0.9
756,298 + PGA1_c07330 0.82 +0.6
756,301 + PGA1_c07330 0.82 -0.1
756,343 + PGA1_c07330 0.84 +1.0
756,351 - PGA1_c07330 0.84 +0.3
756,351 - PGA1_c07330 0.84 +0.9
756,418 + PGA1_c07330 0.88 -0.9
756,432 - PGA1_c07330 0.88 +1.3
756,481 + -1.6
756,557 + -1.4
756,557 + -0.1
756,557 + +1.2
756,599 + -0.2
756,624 - -1.4
756,640 - -0.8
756,640 - +0.5
756,640 - +0.6
756,647 - -0.3
756,657 - -1.6
756,715 + -1.2
756,715 + -1.1
756,715 + -0.0
756,735 + -1.5
756,823 - PGA1_c07340 0.19 -2.9
756,861 - PGA1_c07340 0.23 -1.3
756,888 - PGA1_c07340 0.26 -1.1
757,033 - PGA1_c07340 0.43 -0.4
757,222 + PGA1_c07340 0.64 -0.2
757,230 - PGA1_c07340 0.65 -0.3
757,230 - PGA1_c07340 0.65 +1.2
757,231 - PGA1_c07340 0.65 -0.7
757,258 + PGA1_c07340 0.68 -0.1
757,307 + PGA1_c07340 0.74 -1.7
757,315 - PGA1_c07340 0.75 -0.1
757,320 - PGA1_c07340 0.75 -0.2
757,320 - PGA1_c07340 0.75 -0.1
757,320 - PGA1_c07340 0.75 -1.6
757,346 + PGA1_c07340 0.78 +0.4
757,381 + PGA1_c07340 0.82 +0.3
757,424 - PGA1_c07340 0.87 -1.1
757,495 - -0.4
757,591 - PGA1_c07350 0.11 -0.9
757,610 - PGA1_c07350 0.14 -1.8
757,610 - PGA1_c07350 0.14 -0.7
757,689 + PGA1_c07350 0.27 +1.6
757,798 + PGA1_c07350 0.45 +2.2
757,868 - PGA1_c07350 0.56 +0.6
757,940 + PGA1_c07350 0.68 +0.0
757,946 - PGA1_c07350 0.69 -1.0
757,946 - PGA1_c07350 0.69 +0.7
757,959 - PGA1_c07350 0.71 -0.9
758,044 + PGA1_c07350 0.85 -1.0
758,110 + -0.8
758,110 + -0.7
758,176 - +0.4
758,192 - -1.1
758,206 + -1.6
758,211 + +1.1
758,259 + PGA1_c07360 0.13 -3.1
758,259 + PGA1_c07360 0.13 -0.0
758,263 + PGA1_c07360 0.13 -1.0
758,354 + PGA1_c07360 0.23 +0.0
758,354 + PGA1_c07360 0.23 +0.8
758,360 - PGA1_c07360 0.23 -0.4
758,409 + PGA1_c07360 0.28 +0.9
758,427 - PGA1_c07360 0.30 -0.0

Or see this region's nucleotide sequence