Experiment: m.b. Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c05020 and PGA1_c05040 are separated by 670 nucleotides PGA1_c05040 and PGA1_c05050 are separated by 311 nucleotides PGA1_c05050 and PGA1_c05060 are separated by 124 nucleotides
PGA1_c05020: PGA1_c05020 - phenylacetic acid degradation NADH oxidoreductase, at 496,421 to 497,506
_c05020
PGA1_c05040: PGA1_c05040 - transposase, at 498,177 to 498,566
_c05040
PGA1_c05050: PGA1_c05050 - tRNA-Ser, at 498,878 to 498,967
_c05050
PGA1_c05060: PGA1_c05060 - putative short chain dehydrogenase, at 499,092 to 499,790
_c05060
Position (kb) 498
499 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 497.213 kb on + strand, within PGA1_c05020 at 497.236 kb on - strand, within PGA1_c05020 at 497.236 kb on - strand, within PGA1_c05020 at 497.236 kb on - strand, within PGA1_c05020 at 497.247 kb on + strand, within PGA1_c05020 at 497.268 kb on + strand, within PGA1_c05020 at 497.269 kb on + strand, within PGA1_c05020 at 497.269 kb on + strand, within PGA1_c05020 at 497.277 kb on - strand, within PGA1_c05020 at 497.281 kb on - strand, within PGA1_c05020 at 497.308 kb on - strand, within PGA1_c05020 at 497.308 kb on - strand, within PGA1_c05020 at 497.314 kb on - strand, within PGA1_c05020 at 497.314 kb on - strand, within PGA1_c05020 at 497.314 kb on - strand, within PGA1_c05020 at 497.350 kb on - strand, within PGA1_c05020 at 497.355 kb on + strand, within PGA1_c05020 at 497.373 kb on + strand, within PGA1_c05020 at 497.424 kb on - strand at 497.440 kb on + strand at 497.448 kb on - strand at 497.450 kb on + strand at 497.450 kb on + strand at 497.458 kb on - strand at 497.458 kb on - strand at 497.469 kb on + strand at 497.469 kb on + strand at 497.472 kb on - strand at 497.477 kb on - strand at 497.477 kb on - strand at 497.477 kb on - strand at 497.477 kb on - strand at 497.477 kb on - strand at 497.477 kb on - strand at 497.477 kb on - strand at 497.478 kb on - strand at 497.520 kb on + strand at 497.525 kb on + strand at 497.525 kb on + strand at 497.528 kb on - strand at 497.528 kb on - strand at 497.528 kb on - strand at 497.580 kb on - strand at 498.635 kb on - strand at 498.659 kb on + strand at 498.680 kb on + strand at 498.693 kb on - strand at 498.718 kb on - strand at 498.740 kb on + strand at 498.740 kb on + strand at 498.740 kb on + strand at 498.740 kb on + strand at 498.748 kb on - strand at 498.748 kb on - strand at 498.748 kb on - strand at 498.755 kb on + strand at 498.986 kb on + strand at 499.004 kb on - strand at 499.015 kb on + strand at 499.066 kb on - strand at 499.078 kb on + strand at 499.113 kb on + strand at 499.121 kb on - strand at 499.123 kb on + strand at 499.123 kb on + strand at 499.123 kb on + strand at 499.123 kb on + strand at 499.123 kb on + strand at 499.124 kb on + strand at 499.131 kb on - strand at 499.131 kb on - strand at 499.131 kb on - strand at 499.131 kb on - strand at 499.131 kb on - strand at 499.131 kb on - strand at 499.131 kb on - strand at 499.131 kb on - strand at 499.131 kb on - strand at 499.131 kb on - strand at 499.151 kb on + strand at 499.175 kb on - strand, within PGA1_c05060 at 499.197 kb on + strand, within PGA1_c05060 at 499.197 kb on + strand, within PGA1_c05060 at 499.205 kb on - strand, within PGA1_c05060 at 499.210 kb on - strand, within PGA1_c05060 at 499.262 kb on - strand, within PGA1_c05060 at 499.262 kb on - strand, within PGA1_c05060 at 499.263 kb on + strand, within PGA1_c05060 at 499.276 kb on - strand, within PGA1_c05060 at 499.280 kb on + strand, within PGA1_c05060 at 499.280 kb on + strand, within PGA1_c05060 at 499.280 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.297 kb on - strand, within PGA1_c05060 at 499.297 kb on - strand, within PGA1_c05060 at 499.297 kb on - strand, within PGA1_c05060 at 499.297 kb on - strand, within PGA1_c05060 at 499.297 kb on - strand, within PGA1_c05060 at 499.297 kb on - strand, within PGA1_c05060 at 499.297 kb on - strand, within PGA1_c05060 at 499.297 kb on - strand, within PGA1_c05060 at 499.297 kb on - strand, within PGA1_c05060 at 499.297 kb on - strand, within PGA1_c05060 at 499.297 kb on - strand, within PGA1_c05060 at 499.297 kb on - strand, within PGA1_c05060 at 499.297 kb on - strand, within PGA1_c05060 at 499.297 kb on - strand, within PGA1_c05060 at 499.297 kb on - strand, within PGA1_c05060 at 499.306 kb on + strand, within PGA1_c05060 at 499.308 kb on + strand, within PGA1_c05060 at 499.352 kb on + strand, within PGA1_c05060 at 499.407 kb on - strand, within PGA1_c05060 at 499.449 kb on + strand, within PGA1_c05060 at 499.524 kb on + strand, within PGA1_c05060 at 499.524 kb on + strand, within PGA1_c05060 at 499.524 kb on + strand, within PGA1_c05060 at 499.530 kb on + strand, within PGA1_c05060 at 499.532 kb on - strand, within PGA1_c05060 at 499.545 kb on + strand, within PGA1_c05060 at 499.545 kb on + strand, within PGA1_c05060 at 499.545 kb on + strand, within PGA1_c05060 at 499.550 kb on + strand, within PGA1_c05060 at 499.550 kb on + strand, within PGA1_c05060 at 499.550 kb on + strand, within PGA1_c05060 at 499.550 kb on + strand, within PGA1_c05060 at 499.553 kb on - strand, within PGA1_c05060 at 499.558 kb on - strand, within PGA1_c05060 at 499.558 kb on - strand, within PGA1_c05060 at 499.558 kb on - strand, within PGA1_c05060
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM remove 497,213 + PGA1_c05020 0.73 -3.1 497,236 - PGA1_c05020 0.75 +0.1 497,236 - PGA1_c05020 0.75 -1.0 497,236 - PGA1_c05020 0.75 -1.2 497,247 + PGA1_c05020 0.76 +0.6 497,268 + PGA1_c05020 0.78 +0.9 497,269 + PGA1_c05020 0.78 -0.8 497,269 + PGA1_c05020 0.78 +0.9 497,277 - PGA1_c05020 0.79 -1.3 497,281 - PGA1_c05020 0.79 +2.5 497,308 - PGA1_c05020 0.82 +0.6 497,308 - PGA1_c05020 0.82 +0.8 497,314 - PGA1_c05020 0.82 -1.0 497,314 - PGA1_c05020 0.82 +0.6 497,314 - PGA1_c05020 0.82 +0.5 497,350 - PGA1_c05020 0.86 +0.5 497,355 + PGA1_c05020 0.86 -1.4 497,373 + PGA1_c05020 0.88 +0.1 497,424 - +1.4 497,440 + +0.6 497,448 - +1.1 497,450 + +1.8 497,450 + -2.6 497,458 - +0.2 497,458 - +0.2 497,469 + +0.2 497,469 + +0.1 497,472 - +0.6 497,477 - -0.3 497,477 - -0.7 497,477 - +0.6 497,477 - -0.8 497,477 - +0.8 497,477 - -0.0 497,477 - +2.4 497,478 - +0.8 497,520 + -2.5 497,525 + -0.9 497,525 + -0.1 497,528 - +0.4 497,528 - -0.4 497,528 - -0.3 497,580 - +0.7 498,635 - -0.6 498,659 + +1.7 498,680 + +0.1 498,693 - +1.4 498,718 - -0.2 498,740 + +0.1 498,740 + +0.5 498,740 + +0.5 498,740 + +0.9 498,748 - -1.3 498,748 - +0.4 498,748 - -0.6 498,755 + +0.5 498,986 + +0.0 499,004 - +0.6 499,015 + +0.6 499,066 - -0.9 499,078 + -1.4 499,113 + +0.3 499,121 - -0.5 499,123 + -0.0 499,123 + -0.7 499,123 + -1.6 499,123 + +0.8 499,123 + +0.2 499,124 + +0.4 499,131 - -0.6 499,131 - +0.2 499,131 - +2.0 499,131 - +0.4 499,131 - +0.8 499,131 - -1.3 499,131 - -0.6 499,131 - -0.5 499,131 - -1.3 499,131 - +0.2 499,151 + +1.3 499,175 - PGA1_c05060 0.12 +0.1 499,197 + PGA1_c05060 0.15 -0.2 499,197 + PGA1_c05060 0.15 -2.3 499,205 - PGA1_c05060 0.16 -0.4 499,210 - PGA1_c05060 0.17 +0.2 499,262 - PGA1_c05060 0.24 +0.1 499,262 - PGA1_c05060 0.24 -1.0 499,263 + PGA1_c05060 0.24 -0.9 499,276 - PGA1_c05060 0.26 -1.4 499,280 + PGA1_c05060 0.27 -0.0 499,280 + PGA1_c05060 0.27 -0.8 499,280 + PGA1_c05060 0.27 +2.1 499,289 + PGA1_c05060 0.28 -1.3 499,289 + PGA1_c05060 0.28 -0.6 499,289 + PGA1_c05060 0.28 -2.5 499,289 + PGA1_c05060 0.28 -0.2 499,289 + PGA1_c05060 0.28 +1.2 499,289 + PGA1_c05060 0.28 -1.7 499,289 + PGA1_c05060 0.28 +1.7 499,289 + PGA1_c05060 0.28 +0.7 499,289 + PGA1_c05060 0.28 -0.5 499,289 + PGA1_c05060 0.28 -0.5 499,289 + PGA1_c05060 0.28 -0.1 499,289 + PGA1_c05060 0.28 +0.2 499,289 + PGA1_c05060 0.28 +0.6 499,289 + PGA1_c05060 0.28 +0.7 499,289 + PGA1_c05060 0.28 -1.1 499,289 + PGA1_c05060 0.28 +0.3 499,289 + PGA1_c05060 0.28 +0.3 499,289 + PGA1_c05060 0.28 +1.0 499,289 + PGA1_c05060 0.28 -1.4 499,289 + PGA1_c05060 0.28 -1.0 499,289 + PGA1_c05060 0.28 +1.6 499,289 + PGA1_c05060 0.28 +0.1 499,289 + PGA1_c05060 0.28 +0.9 499,289 + PGA1_c05060 0.28 -0.1 499,289 + PGA1_c05060 0.28 -2.6 499,289 + PGA1_c05060 0.28 +0.1 499,289 + PGA1_c05060 0.28 +1.3 499,297 - PGA1_c05060 0.29 +1.3 499,297 - PGA1_c05060 0.29 +0.1 499,297 - PGA1_c05060 0.29 +0.8 499,297 - PGA1_c05060 0.29 -0.1 499,297 - PGA1_c05060 0.29 +1.1 499,297 - PGA1_c05060 0.29 -0.5 499,297 - PGA1_c05060 0.29 -0.0 499,297 - PGA1_c05060 0.29 -0.3 499,297 - PGA1_c05060 0.29 +1.2 499,297 - PGA1_c05060 0.29 +1.7 499,297 - PGA1_c05060 0.29 +0.8 499,297 - PGA1_c05060 0.29 -0.5 499,297 - PGA1_c05060 0.29 +0.1 499,297 - PGA1_c05060 0.29 -0.6 499,297 - PGA1_c05060 0.29 +0.5 499,306 + PGA1_c05060 0.31 -1.0 499,308 + PGA1_c05060 0.31 -1.0 499,352 + PGA1_c05060 0.37 -0.9 499,407 - PGA1_c05060 0.45 -0.1 499,449 + PGA1_c05060 0.51 +1.0 499,524 + PGA1_c05060 0.62 -0.5 499,524 + PGA1_c05060 0.62 +0.3 499,524 + PGA1_c05060 0.62 +0.1 499,530 + PGA1_c05060 0.63 -2.4 499,532 - PGA1_c05060 0.63 -1.0 499,545 + PGA1_c05060 0.65 +1.4 499,545 + PGA1_c05060 0.65 +0.5 499,545 + PGA1_c05060 0.65 +0.8 499,550 + PGA1_c05060 0.66 -0.3 499,550 + PGA1_c05060 0.66 +0.2 499,550 + PGA1_c05060 0.66 -0.8 499,550 + PGA1_c05060 0.66 +0.1 499,553 - PGA1_c05060 0.66 +0.4 499,558 - PGA1_c05060 0.67 +1.3 499,558 - PGA1_c05060 0.67 -1.1 499,558 - PGA1_c05060 0.67 -0.2
Or see this region's nucleotide sequence