Strain Fitness in Marinobacter adhaerens HP15 around HP15_3818

Experiment: m.b. copper (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3817 and HP15_3818 are separated by 128 nucleotidesHP15_3818 and HP15_3819 are separated by 9 nucleotides HP15_3817: HP15_3817 - alpha/beta hydrolase fold-like protein, at 4,042,165 to 4,043,052 _3817 HP15_3818: HP15_3818 - extracellular nuclease, at 4,043,181 to 4,044,941 _3818 HP15_3819: HP15_3819 - transcriptional regulator, DeoR, predicted, at 4,044,951 to 4,045,892 _3819 Position (kb) 4043 4044 4045Strain fitness (log2 ratio) -1 0 1 2at 4042.191 kb on + strandat 4042.255 kb on - strand, within HP15_3817at 4042.432 kb on - strand, within HP15_3817at 4042.507 kb on + strand, within HP15_3817at 4042.515 kb on - strand, within HP15_3817at 4042.565 kb on + strand, within HP15_3817at 4042.565 kb on + strand, within HP15_3817at 4042.573 kb on - strand, within HP15_3817at 4042.573 kb on - strand, within HP15_3817at 4042.591 kb on - strand, within HP15_3817at 4042.686 kb on + strand, within HP15_3817at 4042.694 kb on - strand, within HP15_3817at 4042.720 kb on - strand, within HP15_3817at 4042.761 kb on - strand, within HP15_3817at 4042.824 kb on - strand, within HP15_3817at 4043.024 kb on + strandat 4043.094 kb on + strandat 4043.121 kb on - strandat 4043.272 kb on + strandat 4043.279 kb on + strandat 4043.345 kb on + strandat 4043.364 kb on + strand, within HP15_3818at 4043.364 kb on + strand, within HP15_3818at 4043.364 kb on + strand, within HP15_3818at 4043.439 kb on + strand, within HP15_3818at 4043.447 kb on - strand, within HP15_3818at 4043.606 kb on - strand, within HP15_3818at 4043.611 kb on + strand, within HP15_3818at 4043.666 kb on + strand, within HP15_3818at 4043.802 kb on + strand, within HP15_3818at 4043.958 kb on + strand, within HP15_3818at 4043.966 kb on - strand, within HP15_3818at 4044.082 kb on + strand, within HP15_3818at 4044.158 kb on + strand, within HP15_3818at 4044.158 kb on + strand, within HP15_3818at 4044.273 kb on - strand, within HP15_3818at 4044.289 kb on + strand, within HP15_3818at 4044.297 kb on - strand, within HP15_3818at 4044.392 kb on + strand, within HP15_3818at 4044.480 kb on - strand, within HP15_3818at 4044.550 kb on - strand, within HP15_3818at 4044.564 kb on + strand, within HP15_3818at 4044.572 kb on - strand, within HP15_3818at 4044.801 kb on + strandat 4044.815 kb on - strandat 4044.941 kb on + strandat 4044.970 kb on + strandat 4045.131 kb on + strand, within HP15_3819at 4045.382 kb on - strand, within HP15_3819at 4045.606 kb on + strand, within HP15_3819at 4045.774 kb on + strand, within HP15_3819at 4045.917 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 1 mM
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4,042,191 + +0.6
4,042,255 - HP15_3817 0.10 +0.6
4,042,432 - HP15_3817 0.30 +0.8
4,042,507 + HP15_3817 0.39 +0.1
4,042,515 - HP15_3817 0.39 +0.3
4,042,565 + HP15_3817 0.45 +0.7
4,042,565 + HP15_3817 0.45 -0.3
4,042,573 - HP15_3817 0.46 +0.4
4,042,573 - HP15_3817 0.46 -0.3
4,042,591 - HP15_3817 0.48 +0.5
4,042,686 + HP15_3817 0.59 -0.2
4,042,694 - HP15_3817 0.60 +0.3
4,042,720 - HP15_3817 0.62 -0.1
4,042,761 - HP15_3817 0.67 +0.7
4,042,824 - HP15_3817 0.74 -0.5
4,043,024 + +2.0
4,043,094 + -0.0
4,043,121 - -0.9
4,043,272 + -0.2
4,043,279 + -0.7
4,043,345 + +0.3
4,043,364 + HP15_3818 0.10 -0.4
4,043,364 + HP15_3818 0.10 +0.4
4,043,364 + HP15_3818 0.10 -0.6
4,043,439 + HP15_3818 0.15 +0.3
4,043,447 - HP15_3818 0.15 +0.0
4,043,606 - HP15_3818 0.24 +0.0
4,043,611 + HP15_3818 0.24 -0.2
4,043,666 + HP15_3818 0.28 -0.1
4,043,802 + HP15_3818 0.35 -0.8
4,043,958 + HP15_3818 0.44 -0.3
4,043,966 - HP15_3818 0.45 +0.0
4,044,082 + HP15_3818 0.51 -0.0
4,044,158 + HP15_3818 0.55 +0.3
4,044,158 + HP15_3818 0.55 -0.0
4,044,273 - HP15_3818 0.62 +0.3
4,044,289 + HP15_3818 0.63 -0.4
4,044,297 - HP15_3818 0.63 -0.0
4,044,392 + HP15_3818 0.69 +0.1
4,044,480 - HP15_3818 0.74 +0.2
4,044,550 - HP15_3818 0.78 -0.4
4,044,564 + HP15_3818 0.79 +0.3
4,044,572 - HP15_3818 0.79 -0.0
4,044,801 + +0.2
4,044,815 - -0.9
4,044,941 + +0.2
4,044,970 + +0.2
4,045,131 + HP15_3819 0.19 -0.1
4,045,382 - HP15_3819 0.46 +0.4
4,045,606 + HP15_3819 0.70 +0.0
4,045,774 + HP15_3819 0.87 -0.0
4,045,917 - -0.1

Or see this region's nucleotide sequence