Experiment: m.b. Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01120 and PGA1_262p01130 are separated by 61 nucleotides PGA1_262p01130 and PGA1_262p01140 are separated by 225 nucleotides PGA1_262p01140 and PGA1_262p01150 are separated by 139 nucleotides PGA1_262p01150 and PGA1_262p01160 overlap by 30 nucleotides
PGA1_262p01120: PGA1_262p01120 - hypothetical protein, at 120,907 to 121,305
_262p01120
PGA1_262p01130: PGA1_262p01130 - hypothetical protein, at 121,367 to 122,032
_262p01130
PGA1_262p01140: PGA1_262p01140 - RTX toxins and related Ca2+-binding proteins, at 122,258 to 127,435
_262p01140
PGA1_262p01150: PGA1_262p01150 - hypothetical protein, at 127,575 to 127,769
_262p01150
PGA1_262p01160: PGA1_262p01160 - Uncharacterized iron-regulated membrane protein, at 127,740 to 129,128
_262p01160
Position (kb)
122
123
124
125
126
127
128 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 121.266 kb on + strand at 121.351 kb on + strand at 121.446 kb on + strand, within PGA1_262p01130 at 121.584 kb on + strand, within PGA1_262p01130 at 121.592 kb on - strand, within PGA1_262p01130 at 121.765 kb on + strand, within PGA1_262p01130 at 121.773 kb on - strand, within PGA1_262p01130 at 121.990 kb on - strand at 122.052 kb on - strand at 122.096 kb on + strand at 122.101 kb on + strand at 122.125 kb on + strand at 122.133 kb on - strand at 122.198 kb on + strand at 122.287 kb on - strand at 122.288 kb on - strand at 122.292 kb on + strand at 122.292 kb on + strand at 122.292 kb on + strand at 122.292 kb on + strand at 122.292 kb on + strand at 122.294 kb on + strand at 122.300 kb on - strand at 122.300 kb on - strand at 122.300 kb on - strand at 122.300 kb on - strand at 122.300 kb on - strand at 122.300 kb on - strand at 122.300 kb on - strand at 122.300 kb on - strand at 122.300 kb on - strand at 122.300 kb on - strand at 122.300 kb on - strand at 122.300 kb on - strand at 122.300 kb on - strand at 122.305 kb on - strand at 122.310 kb on - strand at 122.310 kb on - strand at 122.328 kb on - strand at 122.343 kb on - strand at 122.350 kb on + strand at 122.367 kb on - strand at 122.368 kb on - strand at 122.370 kb on + strand at 122.374 kb on + strand at 122.453 kb on - strand at 122.530 kb on + strand at 122.538 kb on - strand at 122.587 kb on + strand at 122.595 kb on - strand at 122.736 kb on - strand at 122.759 kb on + strand at 122.771 kb on + strand at 122.877 kb on + strand, within PGA1_262p01140 at 122.882 kb on + strand, within PGA1_262p01140 at 122.959 kb on - strand, within PGA1_262p01140 at 123.059 kb on + strand, within PGA1_262p01140 at 123.067 kb on - strand, within PGA1_262p01140 at 123.148 kb on + strand, within PGA1_262p01140 at 123.156 kb on - strand, within PGA1_262p01140 at 123.203 kb on + strand, within PGA1_262p01140 at 123.225 kb on + strand, within PGA1_262p01140 at 123.432 kb on + strand, within PGA1_262p01140 at 123.437 kb on + strand, within PGA1_262p01140 at 123.539 kb on + strand, within PGA1_262p01140 at 123.539 kb on + strand, within PGA1_262p01140 at 123.729 kb on - strand, within PGA1_262p01140 at 123.885 kb on + strand, within PGA1_262p01140 at 123.893 kb on - strand, within PGA1_262p01140 at 124.153 kb on - strand, within PGA1_262p01140 at 124.274 kb on + strand, within PGA1_262p01140 at 124.377 kb on - strand, within PGA1_262p01140 at 124.634 kb on + strand, within PGA1_262p01140 at 124.634 kb on + strand, within PGA1_262p01140 at 124.634 kb on + strand, within PGA1_262p01140 at 124.853 kb on + strand, within PGA1_262p01140 at 124.946 kb on + strand, within PGA1_262p01140 at 124.992 kb on - strand, within PGA1_262p01140 at 125.035 kb on + strand, within PGA1_262p01140 at 125.059 kb on + strand, within PGA1_262p01140 at 125.216 kb on + strand, within PGA1_262p01140 at 125.222 kb on + strand, within PGA1_262p01140 at 125.224 kb on - strand, within PGA1_262p01140 at 125.236 kb on + strand, within PGA1_262p01140 at 125.274 kb on - strand, within PGA1_262p01140 at 125.576 kb on - strand, within PGA1_262p01140 at 125.600 kb on - strand, within PGA1_262p01140 at 125.718 kb on - strand, within PGA1_262p01140 at 125.881 kb on + strand, within PGA1_262p01140 at 125.881 kb on + strand, within PGA1_262p01140 at 125.905 kb on + strand, within PGA1_262p01140 at 125.976 kb on + strand, within PGA1_262p01140 at 125.984 kb on - strand, within PGA1_262p01140 at 126.198 kb on + strand, within PGA1_262p01140 at 126.344 kb on + strand, within PGA1_262p01140 at 126.344 kb on + strand, within PGA1_262p01140 at 126.352 kb on - strand, within PGA1_262p01140 at 126.365 kb on - strand, within PGA1_262p01140 at 126.452 kb on + strand, within PGA1_262p01140 at 126.556 kb on + strand, within PGA1_262p01140 at 126.681 kb on - strand, within PGA1_262p01140 at 126.753 kb on + strand, within PGA1_262p01140 at 126.980 kb on + strand at 127.276 kb on + strand at 127.359 kb on + strand at 127.385 kb on - strand at 127.385 kb on - strand at 127.411 kb on + strand at 127.419 kb on - strand at 127.470 kb on - strand at 127.518 kb on + strand at 127.647 kb on + strand, within PGA1_262p01150 at 127.959 kb on + strand, within PGA1_262p01160 at 128.015 kb on + strand, within PGA1_262p01160 at 128.015 kb on + strand, within PGA1_262p01160 at 128.018 kb on + strand, within PGA1_262p01160 at 128.023 kb on - strand, within PGA1_262p01160 at 128.150 kb on - strand, within PGA1_262p01160 at 128.410 kb on - strand, within PGA1_262p01160
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM remove 121,266 + -1.1 121,351 + -0.4 121,446 + PGA1_262p01130 0.12 -2.5 121,584 + PGA1_262p01130 0.33 +0.9 121,592 - PGA1_262p01130 0.34 -0.5 121,765 + PGA1_262p01130 0.60 +1.8 121,773 - PGA1_262p01130 0.61 +0.1 121,990 - -0.5 122,052 - +1.0 122,096 + -0.8 122,101 + +1.9 122,125 + -1.3 122,133 - -2.5 122,198 + +1.4 122,287 - -0.5 122,288 - +1.1 122,292 + -1.5 122,292 + +0.2 122,292 + -0.6 122,292 + +0.7 122,292 + -1.8 122,294 + -1.0 122,300 - -1.5 122,300 - +0.5 122,300 - -0.3 122,300 - -0.3 122,300 - -0.9 122,300 - +0.2 122,300 - -1.8 122,300 - -0.5 122,300 - +1.3 122,300 - +1.0 122,300 - +1.4 122,300 - -0.2 122,300 - +1.0 122,305 - +1.0 122,310 - -0.3 122,310 - +0.2 122,328 - +0.3 122,343 - -1.4 122,350 + -0.3 122,367 - +1.3 122,368 - +0.8 122,370 + +1.1 122,374 + -0.2 122,453 - +0.7 122,530 + -0.7 122,538 - +1.1 122,587 + -0.1 122,595 - -0.8 122,736 - -0.8 122,759 + -1.2 122,771 + -1.1 122,877 + PGA1_262p01140 0.12 +0.8 122,882 + PGA1_262p01140 0.12 -0.3 122,959 - PGA1_262p01140 0.14 -1.6 123,059 + PGA1_262p01140 0.15 -1.0 123,067 - PGA1_262p01140 0.16 -0.0 123,148 + PGA1_262p01140 0.17 -0.9 123,156 - PGA1_262p01140 0.17 -0.8 123,203 + PGA1_262p01140 0.18 -0.7 123,225 + PGA1_262p01140 0.19 -0.3 123,432 + PGA1_262p01140 0.23 -0.5 123,437 + PGA1_262p01140 0.23 -2.6 123,539 + PGA1_262p01140 0.25 +0.1 123,539 + PGA1_262p01140 0.25 -0.6 123,729 - PGA1_262p01140 0.28 -0.3 123,885 + PGA1_262p01140 0.31 +0.2 123,893 - PGA1_262p01140 0.32 -0.0 124,153 - PGA1_262p01140 0.37 +0.5 124,274 + PGA1_262p01140 0.39 -2.4 124,377 - PGA1_262p01140 0.41 -0.3 124,634 + PGA1_262p01140 0.46 -1.0 124,634 + PGA1_262p01140 0.46 -1.0 124,634 + PGA1_262p01140 0.46 +0.6 124,853 + PGA1_262p01140 0.50 -0.8 124,946 + PGA1_262p01140 0.52 +0.0 124,992 - PGA1_262p01140 0.53 -0.6 125,035 + PGA1_262p01140 0.54 +0.7 125,059 + PGA1_262p01140 0.54 -0.1 125,216 + PGA1_262p01140 0.57 +0.6 125,222 + PGA1_262p01140 0.57 +0.4 125,224 - PGA1_262p01140 0.57 -0.8 125,236 + PGA1_262p01140 0.58 +1.3 125,274 - PGA1_262p01140 0.58 -0.0 125,576 - PGA1_262p01140 0.64 -1.5 125,600 - PGA1_262p01140 0.65 -0.0 125,718 - PGA1_262p01140 0.67 -0.3 125,881 + PGA1_262p01140 0.70 -0.8 125,881 + PGA1_262p01140 0.70 -0.2 125,905 + PGA1_262p01140 0.70 -1.5 125,976 + PGA1_262p01140 0.72 +0.4 125,984 - PGA1_262p01140 0.72 -0.9 126,198 + PGA1_262p01140 0.76 -1.2 126,344 + PGA1_262p01140 0.79 +1.1 126,344 + PGA1_262p01140 0.79 +0.5 126,352 - PGA1_262p01140 0.79 -1.0 126,365 - PGA1_262p01140 0.79 -0.7 126,452 + PGA1_262p01140 0.81 -0.4 126,556 + PGA1_262p01140 0.83 +0.8 126,681 - PGA1_262p01140 0.85 +0.8 126,753 + PGA1_262p01140 0.87 -0.8 126,980 + -0.5 127,276 + -0.7 127,359 + +0.9 127,385 - +0.3 127,385 - +1.3 127,411 + +0.6 127,419 - -1.5 127,470 - -2.0 127,518 + -1.5 127,647 + PGA1_262p01150 0.37 -0.6 127,959 + PGA1_262p01160 0.16 -1.8 128,015 + PGA1_262p01160 0.20 +0.1 128,015 + PGA1_262p01160 0.20 -0.1 128,018 + PGA1_262p01160 0.20 -1.9 128,023 - PGA1_262p01160 0.20 -0.7 128,150 - PGA1_262p01160 0.30 -0.6 128,410 - PGA1_262p01160 0.48 +0.6
Or see this region's nucleotide sequence