Experiment: m.b. copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3264 and HP15_3265 are separated by 202 nucleotides HP15_3265 and HP15_3266 are separated by 50 nucleotides HP15_3266 and HP15_3267 are separated by 158 nucleotides
HP15_3264: HP15_3264 - sensory box sensor/GGDEF/EAL domain protein, at 3,419,753 to 3,421,477
_3264
HP15_3265: HP15_3265 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor, at 3,421,680 to 3,423,311
_3265
HP15_3266: HP15_3266 - conserved hypothetical protein, at 3,423,362 to 3,423,676
_3266
HP15_3267: HP15_3267 - lipase precursor, at 3,423,835 to 3,424,734
_3267
Position (kb)
3421
3422
3423
3424 Strain fitness (log2 ratio)
-1
0
1 at 3420.737 kb on + strand, within HP15_3264 at 3420.737 kb on + strand, within HP15_3264 at 3420.745 kb on - strand, within HP15_3264 at 3420.745 kb on - strand, within HP15_3264 at 3420.855 kb on - strand, within HP15_3264 at 3420.942 kb on + strand, within HP15_3264 at 3420.958 kb on + strand, within HP15_3264 at 3420.959 kb on + strand, within HP15_3264 at 3420.970 kb on + strand, within HP15_3264 at 3420.970 kb on + strand, within HP15_3264 at 3420.978 kb on - strand, within HP15_3264 at 3421.002 kb on - strand, within HP15_3264 at 3421.050 kb on - strand, within HP15_3264 at 3421.199 kb on - strand, within HP15_3264 at 3421.487 kb on + strand at 3421.628 kb on + strand at 3421.650 kb on + strand at 3421.715 kb on + strand at 3421.718 kb on - strand at 3421.738 kb on - strand at 3421.755 kb on - strand at 3421.755 kb on - strand at 3421.803 kb on + strand at 3422.009 kb on + strand, within HP15_3265 at 3422.030 kb on + strand, within HP15_3265 at 3422.035 kb on + strand, within HP15_3265 at 3422.038 kb on - strand, within HP15_3265 at 3422.038 kb on - strand, within HP15_3265 at 3422.038 kb on - strand, within HP15_3265 at 3422.038 kb on - strand, within HP15_3265 at 3422.110 kb on - strand, within HP15_3265 at 3422.133 kb on + strand, within HP15_3265 at 3422.174 kb on - strand, within HP15_3265 at 3422.184 kb on - strand, within HP15_3265 at 3422.209 kb on - strand, within HP15_3265 at 3422.252 kb on + strand, within HP15_3265 at 3422.260 kb on - strand, within HP15_3265 at 3422.265 kb on - strand, within HP15_3265 at 3422.279 kb on - strand, within HP15_3265 at 3422.289 kb on - strand, within HP15_3265 at 3422.319 kb on + strand, within HP15_3265 at 3422.321 kb on - strand, within HP15_3265 at 3422.327 kb on - strand, within HP15_3265 at 3422.332 kb on - strand, within HP15_3265 at 3422.448 kb on - strand, within HP15_3265 at 3422.535 kb on - strand, within HP15_3265 at 3422.631 kb on - strand, within HP15_3265 at 3422.633 kb on + strand, within HP15_3265 at 3422.790 kb on + strand, within HP15_3265 at 3422.861 kb on - strand, within HP15_3265 at 3422.916 kb on - strand, within HP15_3265 at 3423.055 kb on + strand, within HP15_3265 at 3423.055 kb on - strand, within HP15_3265 at 3423.063 kb on - strand, within HP15_3265 at 3423.104 kb on + strand, within HP15_3265 at 3423.118 kb on + strand, within HP15_3265 at 3423.158 kb on - strand at 3423.415 kb on - strand, within HP15_3266 at 3423.501 kb on - strand, within HP15_3266 at 3423.547 kb on - strand, within HP15_3266 at 3423.601 kb on + strand, within HP15_3266 at 3423.601 kb on + strand, within HP15_3266 at 3423.609 kb on - strand, within HP15_3266 at 3423.609 kb on - strand, within HP15_3266 at 3423.804 kb on + strand at 3423.835 kb on + strand at 3423.881 kb on + strand at 3423.912 kb on + strand at 3423.938 kb on - strand, within HP15_3267 at 3424.002 kb on + strand, within HP15_3267 at 3424.002 kb on + strand, within HP15_3267 at 3424.010 kb on - strand, within HP15_3267 at 3424.010 kb on - strand, within HP15_3267 at 3424.010 kb on - strand, within HP15_3267 at 3424.076 kb on + strand, within HP15_3267 at 3424.114 kb on - strand, within HP15_3267 at 3424.134 kb on + strand, within HP15_3267 at 3424.165 kb on + strand, within HP15_3267 at 3424.267 kb on + strand, within HP15_3267 at 3424.279 kb on + strand, within HP15_3267 at 3424.300 kb on + strand, within HP15_3267 at 3424.305 kb on + strand, within HP15_3267
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 1 mM remove 3,420,737 + HP15_3264 0.57 -0.2 3,420,737 + HP15_3264 0.57 +0.2 3,420,745 - HP15_3264 0.58 +0.0 3,420,745 - HP15_3264 0.58 +0.2 3,420,855 - HP15_3264 0.64 +0.1 3,420,942 + HP15_3264 0.69 -0.0 3,420,958 + HP15_3264 0.70 +0.1 3,420,959 + HP15_3264 0.70 -0.0 3,420,970 + HP15_3264 0.71 -0.0 3,420,970 + HP15_3264 0.71 +0.1 3,420,978 - HP15_3264 0.71 +0.5 3,421,002 - HP15_3264 0.72 -0.0 3,421,050 - HP15_3264 0.75 +0.1 3,421,199 - HP15_3264 0.84 +0.3 3,421,487 + -0.1 3,421,628 + -0.2 3,421,650 + -0.1 3,421,715 + -0.1 3,421,718 - +0.0 3,421,738 - -1.1 3,421,755 - +0.7 3,421,755 - +0.3 3,421,803 + +0.5 3,422,009 + HP15_3265 0.20 -0.3 3,422,030 + HP15_3265 0.21 -0.3 3,422,035 + HP15_3265 0.22 +0.6 3,422,038 - HP15_3265 0.22 +0.1 3,422,038 - HP15_3265 0.22 +0.1 3,422,038 - HP15_3265 0.22 -0.3 3,422,038 - HP15_3265 0.22 +0.4 3,422,110 - HP15_3265 0.26 +0.3 3,422,133 + HP15_3265 0.28 -0.3 3,422,174 - HP15_3265 0.30 -0.3 3,422,184 - HP15_3265 0.31 -0.7 3,422,209 - HP15_3265 0.32 +0.4 3,422,252 + HP15_3265 0.35 -0.5 3,422,260 - HP15_3265 0.36 -1.4 3,422,265 - HP15_3265 0.36 -0.2 3,422,279 - HP15_3265 0.37 -0.1 3,422,289 - HP15_3265 0.37 -0.6 3,422,319 + HP15_3265 0.39 -0.3 3,422,321 - HP15_3265 0.39 -0.1 3,422,327 - HP15_3265 0.40 -0.1 3,422,332 - HP15_3265 0.40 -0.2 3,422,448 - HP15_3265 0.47 -0.0 3,422,535 - HP15_3265 0.52 +0.1 3,422,631 - HP15_3265 0.58 -0.2 3,422,633 + HP15_3265 0.58 +0.5 3,422,790 + HP15_3265 0.68 -0.1 3,422,861 - HP15_3265 0.72 +0.3 3,422,916 - HP15_3265 0.76 +0.1 3,423,055 + HP15_3265 0.84 +0.3 3,423,055 - HP15_3265 0.84 -0.3 3,423,063 - HP15_3265 0.85 -0.9 3,423,104 + HP15_3265 0.87 -0.0 3,423,118 + HP15_3265 0.88 -1.7 3,423,158 - +0.0 3,423,415 - HP15_3266 0.17 +0.2 3,423,501 - HP15_3266 0.44 +0.1 3,423,547 - HP15_3266 0.59 +0.7 3,423,601 + HP15_3266 0.76 -0.5 3,423,601 + HP15_3266 0.76 +0.1 3,423,609 - HP15_3266 0.78 +0.5 3,423,609 - HP15_3266 0.78 +1.2 3,423,804 + -0.2 3,423,835 + +0.2 3,423,881 + -0.2 3,423,912 + +0.5 3,423,938 - HP15_3267 0.11 +0.4 3,424,002 + HP15_3267 0.19 -0.0 3,424,002 + HP15_3267 0.19 -0.1 3,424,010 - HP15_3267 0.19 +1.0 3,424,010 - HP15_3267 0.19 -0.6 3,424,010 - HP15_3267 0.19 +0.6 3,424,076 + HP15_3267 0.27 +0.6 3,424,114 - HP15_3267 0.31 +0.3 3,424,134 + HP15_3267 0.33 +0.9 3,424,165 + HP15_3267 0.37 +0.3 3,424,267 + HP15_3267 0.48 +0.5 3,424,279 + HP15_3267 0.49 +0.3 3,424,300 + HP15_3267 0.52 -0.2 3,424,305 + HP15_3267 0.52 +0.1
Or see this region's nucleotide sequence