Experiment: m.b. Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c02690 and PGA1_c02700 are separated by 172 nucleotides PGA1_c02700 and PGA1_c02710 are separated by 267 nucleotides
PGA1_c02690: PGA1_c02690 - Hemolysin-type calcium-binding repeat (2 copies)., at 254,777 to 257,686
_c02690
PGA1_c02700: PGA1_c02700 - putative HTH-type transcriptional regulator, at 257,859 to 258,872
_c02700
PGA1_c02710: PGA1_c02710 - sn-glycerol-3-phosphate-binding periplasmic protein ugpB, at 259,140 to 260,441
_c02710
Position (kb) 257
258
259 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 256.859 kb on + strand, within PGA1_c02690 at 256.859 kb on + strand, within PGA1_c02690 at 256.859 kb on + strand, within PGA1_c02690 at 256.859 kb on + strand, within PGA1_c02690 at 256.859 kb on + strand, within PGA1_c02690 at 256.866 kb on - strand, within PGA1_c02690 at 256.867 kb on - strand, within PGA1_c02690 at 256.884 kb on + strand, within PGA1_c02690 at 256.884 kb on + strand, within PGA1_c02690 at 256.884 kb on + strand, within PGA1_c02690 at 256.884 kb on + strand, within PGA1_c02690 at 256.884 kb on + strand, within PGA1_c02690 at 256.884 kb on + strand, within PGA1_c02690 at 256.884 kb on + strand, within PGA1_c02690 at 256.884 kb on + strand, within PGA1_c02690 at 256.884 kb on + strand, within PGA1_c02690 at 256.884 kb on + strand, within PGA1_c02690 at 256.884 kb on + strand, within PGA1_c02690 at 256.884 kb on + strand, within PGA1_c02690 at 256.884 kb on + strand, within PGA1_c02690 at 256.884 kb on + strand, within PGA1_c02690 at 256.884 kb on + strand, within PGA1_c02690 at 256.884 kb on + strand, within PGA1_c02690 at 256.884 kb on + strand, within PGA1_c02690 at 256.884 kb on + strand, within PGA1_c02690 at 256.884 kb on + strand, within PGA1_c02690 at 256.884 kb on + strand, within PGA1_c02690 at 256.884 kb on + strand, within PGA1_c02690 at 256.884 kb on + strand, within PGA1_c02690 at 256.884 kb on + strand, within PGA1_c02690 at 256.892 kb on - strand, within PGA1_c02690 at 256.892 kb on - strand, within PGA1_c02690 at 256.892 kb on - strand, within PGA1_c02690 at 256.892 kb on - strand, within PGA1_c02690 at 256.892 kb on - strand, within PGA1_c02690 at 256.892 kb on - strand, within PGA1_c02690 at 256.892 kb on - strand, within PGA1_c02690 at 256.892 kb on - strand, within PGA1_c02690 at 256.892 kb on - strand, within PGA1_c02690 at 256.892 kb on - strand, within PGA1_c02690 at 256.892 kb on - strand, within PGA1_c02690 at 256.894 kb on + strand, within PGA1_c02690 at 256.894 kb on + strand, within PGA1_c02690 at 256.894 kb on + strand, within PGA1_c02690 at 256.894 kb on + strand, within PGA1_c02690 at 256.894 kb on + strand, within PGA1_c02690 at 256.894 kb on + strand, within PGA1_c02690 at 256.894 kb on + strand, within PGA1_c02690 at 256.894 kb on + strand, within PGA1_c02690 at 256.902 kb on - strand, within PGA1_c02690 at 256.902 kb on - strand, within PGA1_c02690 at 256.902 kb on - strand, within PGA1_c02690 at 256.902 kb on - strand, within PGA1_c02690 at 256.902 kb on - strand, within PGA1_c02690 at 256.902 kb on - strand, within PGA1_c02690 at 256.909 kb on - strand, within PGA1_c02690 at 256.923 kb on - strand, within PGA1_c02690 at 256.936 kb on - strand, within PGA1_c02690 at 256.983 kb on - strand, within PGA1_c02690 at 257.004 kb on - strand, within PGA1_c02690 at 257.051 kb on - strand, within PGA1_c02690 at 257.061 kb on + strand, within PGA1_c02690 at 257.083 kb on + strand, within PGA1_c02690 at 257.136 kb on + strand, within PGA1_c02690 at 257.136 kb on + strand, within PGA1_c02690 at 257.136 kb on + strand, within PGA1_c02690 at 257.163 kb on + strand, within PGA1_c02690 at 257.165 kb on + strand, within PGA1_c02690 at 257.173 kb on - strand, within PGA1_c02690 at 257.175 kb on + strand, within PGA1_c02690 at 257.177 kb on + strand, within PGA1_c02690 at 257.177 kb on + strand, within PGA1_c02690 at 257.209 kb on - strand, within PGA1_c02690 at 257.219 kb on - strand, within PGA1_c02690 at 257.234 kb on + strand, within PGA1_c02690 at 257.290 kb on + strand, within PGA1_c02690 at 257.301 kb on + strand, within PGA1_c02690 at 257.377 kb on - strand, within PGA1_c02690 at 257.406 kb on + strand at 257.431 kb on - strand at 257.445 kb on + strand at 257.448 kb on + strand at 257.453 kb on + strand at 257.453 kb on + strand at 257.456 kb on - strand at 257.458 kb on + strand at 257.458 kb on + strand at 257.458 kb on + strand at 257.466 kb on - strand at 257.466 kb on - strand at 257.466 kb on - strand at 257.466 kb on - strand at 257.466 kb on - strand at 257.466 kb on - strand at 257.473 kb on + strand at 257.520 kb on + strand at 257.527 kb on + strand at 257.535 kb on - strand at 257.544 kb on + strand at 257.547 kb on - strand at 257.552 kb on - strand at 257.647 kb on - strand at 257.649 kb on + strand at 257.649 kb on + strand at 257.649 kb on + strand at 257.657 kb on - strand at 257.657 kb on - strand at 257.664 kb on + strand at 257.677 kb on - strand at 257.680 kb on + strand at 257.694 kb on - strand at 257.713 kb on - strand at 257.720 kb on + strand at 257.775 kb on - strand at 257.791 kb on - strand at 257.808 kb on + strand at 257.808 kb on + strand at 257.848 kb on + strand at 257.866 kb on + strand at 257.866 kb on + strand at 257.902 kb on + strand at 257.904 kb on + strand at 257.904 kb on + strand at 257.912 kb on - strand at 257.916 kb on - strand at 257.936 kb on + strand at 257.936 kb on + strand at 257.936 kb on + strand at 257.936 kb on + strand at 257.936 kb on + strand at 257.936 kb on + strand at 257.936 kb on + strand at 257.936 kb on + strand at 257.944 kb on - strand at 257.944 kb on - strand at 257.944 kb on - strand at 257.944 kb on - strand at 257.944 kb on - strand at 257.946 kb on + strand at 257.959 kb on - strand at 258.029 kb on + strand, within PGA1_c02700 at 258.029 kb on + strand, within PGA1_c02700 at 258.037 kb on - strand, within PGA1_c02700 at 258.048 kb on + strand, within PGA1_c02700 at 258.078 kb on + strand, within PGA1_c02700 at 258.136 kb on + strand, within PGA1_c02700 at 258.146 kb on + strand, within PGA1_c02700 at 258.216 kb on + strand, within PGA1_c02700 at 258.268 kb on - strand, within PGA1_c02700 at 258.271 kb on - strand, within PGA1_c02700 at 258.294 kb on + strand, within PGA1_c02700 at 258.294 kb on + strand, within PGA1_c02700 at 258.302 kb on - strand, within PGA1_c02700 at 258.345 kb on - strand, within PGA1_c02700 at 258.376 kb on + strand, within PGA1_c02700 at 258.376 kb on - strand, within PGA1_c02700 at 258.412 kb on - strand, within PGA1_c02700 at 258.421 kb on + strand, within PGA1_c02700 at 258.429 kb on - strand, within PGA1_c02700 at 258.431 kb on + strand, within PGA1_c02700 at 258.501 kb on + strand, within PGA1_c02700 at 258.509 kb on - strand, within PGA1_c02700 at 258.515 kb on - strand, within PGA1_c02700 at 258.533 kb on + strand, within PGA1_c02700 at 258.541 kb on - strand, within PGA1_c02700 at 258.562 kb on - strand, within PGA1_c02700 at 258.593 kb on + strand, within PGA1_c02700 at 258.600 kb on + strand, within PGA1_c02700 at 258.601 kb on - strand, within PGA1_c02700 at 258.609 kb on - strand, within PGA1_c02700 at 258.620 kb on - strand, within PGA1_c02700 at 258.653 kb on + strand, within PGA1_c02700 at 258.688 kb on + strand, within PGA1_c02700 at 258.718 kb on + strand, within PGA1_c02700 at 258.726 kb on - strand, within PGA1_c02700 at 258.733 kb on - strand, within PGA1_c02700 at 258.746 kb on + strand, within PGA1_c02700 at 258.764 kb on + strand, within PGA1_c02700 at 258.877 kb on + strand at 258.920 kb on - strand at 258.939 kb on - strand at 258.939 kb on - strand at 258.982 kb on - strand at 259.026 kb on - strand at 259.032 kb on + strand at 259.032 kb on + strand at 259.034 kb on + strand at 259.042 kb on - strand at 259.049 kb on + strand at 259.074 kb on - strand at 259.090 kb on + strand at 259.125 kb on - strand at 259.191 kb on + strand at 259.226 kb on + strand at 259.244 kb on + strand at 259.252 kb on - strand at 259.279 kb on + strand, within PGA1_c02710 at 259.324 kb on + strand, within PGA1_c02710 at 259.324 kb on + strand, within PGA1_c02710 at 259.376 kb on + strand, within PGA1_c02710 at 259.384 kb on - strand, within PGA1_c02710 at 259.421 kb on - strand, within PGA1_c02710 at 259.443 kb on - strand, within PGA1_c02710 at 259.496 kb on + strand, within PGA1_c02710 at 259.503 kb on + strand, within PGA1_c02710 at 259.551 kb on + strand, within PGA1_c02710 at 259.553 kb on + strand, within PGA1_c02710 at 259.553 kb on + strand, within PGA1_c02710 at 259.561 kb on + strand, within PGA1_c02710 at 259.561 kb on + strand, within PGA1_c02710 at 259.569 kb on - strand, within PGA1_c02710 at 259.569 kb on - strand, within PGA1_c02710 at 259.569 kb on - strand, within PGA1_c02710 at 259.617 kb on - strand, within PGA1_c02710 at 259.620 kb on + strand, within PGA1_c02710 at 259.645 kb on + strand, within PGA1_c02710 at 259.678 kb on + strand, within PGA1_c02710 at 259.693 kb on + strand, within PGA1_c02710 at 259.711 kb on - strand, within PGA1_c02710 at 259.767 kb on + strand, within PGA1_c02710 at 259.767 kb on + strand, within PGA1_c02710 at 259.767 kb on + strand, within PGA1_c02710 at 259.767 kb on + strand, within PGA1_c02710 at 259.809 kb on - strand, within PGA1_c02710
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM remove 256,859 + PGA1_c02690 0.72 -0.3 256,859 + PGA1_c02690 0.72 -0.0 256,859 + PGA1_c02690 0.72 +0.5 256,859 + PGA1_c02690 0.72 +2.0 256,859 + PGA1_c02690 0.72 +0.8 256,866 - PGA1_c02690 0.72 -0.2 256,867 - PGA1_c02690 0.72 -0.5 256,884 + PGA1_c02690 0.72 +0.4 256,884 + PGA1_c02690 0.72 +0.2 256,884 + PGA1_c02690 0.72 -1.2 256,884 + PGA1_c02690 0.72 +0.0 256,884 + PGA1_c02690 0.72 -2.1 256,884 + PGA1_c02690 0.72 +0.1 256,884 + PGA1_c02690 0.72 +0.8 256,884 + PGA1_c02690 0.72 +0.7 256,884 + PGA1_c02690 0.72 +1.4 256,884 + PGA1_c02690 0.72 -2.2 256,884 + PGA1_c02690 0.72 +1.9 256,884 + PGA1_c02690 0.72 +0.3 256,884 + PGA1_c02690 0.72 +1.6 256,884 + PGA1_c02690 0.72 -0.7 256,884 + PGA1_c02690 0.72 +0.8 256,884 + PGA1_c02690 0.72 -0.5 256,884 + PGA1_c02690 0.72 -2.0 256,884 + PGA1_c02690 0.72 -2.2 256,884 + PGA1_c02690 0.72 +1.5 256,884 + PGA1_c02690 0.72 -0.1 256,884 + PGA1_c02690 0.72 -0.9 256,884 + PGA1_c02690 0.72 +1.1 256,884 + PGA1_c02690 0.72 -0.2 256,892 - PGA1_c02690 0.73 +2.6 256,892 - PGA1_c02690 0.73 -2.1 256,892 - PGA1_c02690 0.73 -0.6 256,892 - PGA1_c02690 0.73 -0.8 256,892 - PGA1_c02690 0.73 -0.2 256,892 - PGA1_c02690 0.73 -0.3 256,892 - PGA1_c02690 0.73 -0.2 256,892 - PGA1_c02690 0.73 -0.4 256,892 - PGA1_c02690 0.73 -0.8 256,892 - PGA1_c02690 0.73 +0.3 256,892 - PGA1_c02690 0.73 +0.4 256,894 + PGA1_c02690 0.73 -0.3 256,894 + PGA1_c02690 0.73 -0.4 256,894 + PGA1_c02690 0.73 +0.0 256,894 + PGA1_c02690 0.73 -1.0 256,894 + PGA1_c02690 0.73 +1.5 256,894 + PGA1_c02690 0.73 +0.9 256,894 + PGA1_c02690 0.73 -2.6 256,894 + PGA1_c02690 0.73 +1.0 256,902 - PGA1_c02690 0.73 +0.9 256,902 - PGA1_c02690 0.73 +0.0 256,902 - PGA1_c02690 0.73 +0.5 256,902 - PGA1_c02690 0.73 +0.8 256,902 - PGA1_c02690 0.73 -0.7 256,902 - PGA1_c02690 0.73 +0.7 256,909 - PGA1_c02690 0.73 -0.5 256,923 - PGA1_c02690 0.74 -0.1 256,936 - PGA1_c02690 0.74 -0.5 256,983 - PGA1_c02690 0.76 +0.3 257,004 - PGA1_c02690 0.77 -3.4 257,051 - PGA1_c02690 0.78 +1.9 257,061 + PGA1_c02690 0.78 -0.3 257,083 + PGA1_c02690 0.79 +0.6 257,136 + PGA1_c02690 0.81 +0.7 257,136 + PGA1_c02690 0.81 -1.3 257,136 + PGA1_c02690 0.81 +0.5 257,163 + PGA1_c02690 0.82 +0.6 257,165 + PGA1_c02690 0.82 +1.0 257,173 - PGA1_c02690 0.82 -0.6 257,175 + PGA1_c02690 0.82 +1.4 257,177 + PGA1_c02690 0.82 +0.4 257,177 + PGA1_c02690 0.82 +0.1 257,209 - PGA1_c02690 0.84 -1.6 257,219 - PGA1_c02690 0.84 +1.1 257,234 + PGA1_c02690 0.84 -0.4 257,290 + PGA1_c02690 0.86 -1.2 257,301 + PGA1_c02690 0.87 -0.4 257,377 - PGA1_c02690 0.89 -0.5 257,406 + -0.2 257,431 - +0.5 257,445 + -1.7 257,448 + +0.0 257,453 + +0.2 257,453 + +1.1 257,456 - -0.3 257,458 + +1.0 257,458 + +0.4 257,458 + +0.0 257,466 - +0.5 257,466 - -1.3 257,466 - -1.1 257,466 - +0.1 257,466 - +1.9 257,466 - +0.6 257,473 + +0.7 257,520 + +1.9 257,527 + +1.0 257,535 - -2.5 257,544 + -0.1 257,547 - +2.1 257,552 - +0.1 257,647 - +0.9 257,649 + -0.8 257,649 + +2.1 257,649 + -2.2 257,657 - +1.0 257,657 - +1.2 257,664 + +1.8 257,677 - +0.9 257,680 + -0.9 257,694 - +0.5 257,713 - -1.7 257,720 + -0.4 257,775 - +0.4 257,791 - -0.3 257,808 + +0.2 257,808 + +0.1 257,848 + -0.6 257,866 + -4.1 257,866 + -2.5 257,902 + -1.9 257,904 + -2.3 257,904 + -3.6 257,912 - -1.3 257,916 - +0.2 257,936 + -0.9 257,936 + -0.7 257,936 + -2.5 257,936 + -2.1 257,936 + -1.2 257,936 + -1.9 257,936 + -2.7 257,936 + -1.3 257,944 - -0.2 257,944 - +0.6 257,944 - -3.7 257,944 - -1.1 257,944 - -0.9 257,946 + -1.7 257,959 - -2.0 258,029 + PGA1_c02700 0.17 -1.5 258,029 + PGA1_c02700 0.17 -0.9 258,037 - PGA1_c02700 0.18 -1.2 258,048 + PGA1_c02700 0.19 -2.0 258,078 + PGA1_c02700 0.22 -1.9 258,136 + PGA1_c02700 0.27 -1.1 258,146 + PGA1_c02700 0.28 -1.8 258,216 + PGA1_c02700 0.35 -2.4 258,268 - PGA1_c02700 0.40 -2.9 258,271 - PGA1_c02700 0.41 -1.9 258,294 + PGA1_c02700 0.43 -2.5 258,294 + PGA1_c02700 0.43 -1.8 258,302 - PGA1_c02700 0.44 -4.4 258,345 - PGA1_c02700 0.48 -2.9 258,376 + PGA1_c02700 0.51 -1.2 258,376 - PGA1_c02700 0.51 +0.4 258,412 - PGA1_c02700 0.55 -3.3 258,421 + PGA1_c02700 0.55 -0.7 258,429 - PGA1_c02700 0.56 -1.9 258,431 + PGA1_c02700 0.56 -1.0 258,501 + PGA1_c02700 0.63 -0.1 258,509 - PGA1_c02700 0.64 -0.7 258,515 - PGA1_c02700 0.65 -2.5 258,533 + PGA1_c02700 0.66 -3.7 258,541 - PGA1_c02700 0.67 -1.1 258,562 - PGA1_c02700 0.69 -1.4 258,593 + PGA1_c02700 0.72 -1.4 258,600 + PGA1_c02700 0.73 -2.1 258,601 - PGA1_c02700 0.73 -2.4 258,609 - PGA1_c02700 0.74 -2.9 258,620 - PGA1_c02700 0.75 -1.7 258,653 + PGA1_c02700 0.78 -3.0 258,688 + PGA1_c02700 0.82 -1.0 258,718 + PGA1_c02700 0.85 -2.3 258,726 - PGA1_c02700 0.86 -1.8 258,733 - PGA1_c02700 0.86 -1.8 258,746 + PGA1_c02700 0.87 -0.6 258,764 + PGA1_c02700 0.89 -2.3 258,877 + -0.2 258,920 - +0.9 258,939 - +0.3 258,939 - +1.8 258,982 - +0.5 259,026 - -0.0 259,032 + -0.1 259,032 + +0.3 259,034 + -0.7 259,042 - -2.2 259,049 + +0.1 259,074 - +1.8 259,090 + +0.4 259,125 - +1.2 259,191 + +1.7 259,226 + +0.5 259,244 + -1.2 259,252 - +0.7 259,279 + PGA1_c02710 0.11 +0.4 259,324 + PGA1_c02710 0.14 +0.9 259,324 + PGA1_c02710 0.14 -0.8 259,376 + PGA1_c02710 0.18 +0.7 259,384 - PGA1_c02710 0.19 +1.0 259,421 - PGA1_c02710 0.22 -0.3 259,443 - PGA1_c02710 0.23 -0.8 259,496 + PGA1_c02710 0.27 -0.0 259,503 + PGA1_c02710 0.28 +0.9 259,551 + PGA1_c02710 0.32 +1.0 259,553 + PGA1_c02710 0.32 +0.3 259,553 + PGA1_c02710 0.32 +0.2 259,561 + PGA1_c02710 0.32 +1.3 259,561 + PGA1_c02710 0.32 -1.1 259,569 - PGA1_c02710 0.33 +0.2 259,569 - PGA1_c02710 0.33 +1.3 259,569 - PGA1_c02710 0.33 +0.3 259,617 - PGA1_c02710 0.37 +0.6 259,620 + PGA1_c02710 0.37 +0.8 259,645 + PGA1_c02710 0.39 +0.9 259,678 + PGA1_c02710 0.41 +0.6 259,693 + PGA1_c02710 0.42 -1.1 259,711 - PGA1_c02710 0.44 -0.1 259,767 + PGA1_c02710 0.48 -2.5 259,767 + PGA1_c02710 0.48 -0.1 259,767 + PGA1_c02710 0.48 +1.8 259,767 + PGA1_c02710 0.48 +0.3 259,809 - PGA1_c02710 0.51 +0.5
Or see this region's nucleotide sequence