Strain Fitness in Shewanella oneidensis MR-1 around SO2263

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcysE and SO2263 are separated by 353 nucleotidesSO2263 and iscS are separated by 78 nucleotides SO2262: cysE - serine acetyltransferase (NCBI ptt file), at 2,377,236 to 2,378,057 cysE SO2263: SO2263 - Rrf2 family protein (NCBI ptt file), at 2,378,411 to 2,378,872 SO2263 SO2264: iscS - cysteine desulfurase (NCBI ptt file), at 2,378,951 to 2,380,165 iscS Position (kb) 2378 2379Strain fitness (log2 ratio) -3 -2 -1 0 1at 2378.046 kb on - strandat 2378.168 kb on - strandat 2378.172 kb on + strandat 2378.316 kb on + strandat 2378.657 kb on + strand, within SO2263at 2378.657 kb on + strand, within SO2263at 2378.657 kb on + strand, within SO2263at 2378.843 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,378,046 - +0.9
2,378,168 - -0.2
2,378,172 + -1.4
2,378,316 + -0.5
2,378,657 + SO2263 0.53 -0.5
2,378,657 + SO2263 0.53 +0.9
2,378,657 + SO2263 0.53 -2.9
2,378,843 + -0.4

Or see this region's nucleotide sequence