Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0621 and SO0622 overlap by 4 nucleotides SO0622 and SO0623 overlap by 20 nucleotides SO0623 and crp are separated by 82 nucleotides
SO0621: SO0621 - sensor histidine kinase (NCBI ptt file), at 648,335 to 649,663
SO0621
SO0622: SO0622 - DNA-binding response regulator (NCBI ptt file), at 649,660 to 650,334
SO0622
SO0623: SO0623 - hypothetical protein (NCBI ptt file), at 650,315 to 650,662
SO0623
SO0624: crp - catabolite gene activator (NCBI ptt file), at 650,745 to 651,380
crp
Position (kb) 649
650
651 Strain fitness (log2 ratio) -2
-1
0
1
2 at 648.737 kb on + strand, within SO0621 at 648.866 kb on + strand, within SO0621 at 648.874 kb on + strand, within SO0621 at 648.888 kb on - strand, within SO0621 at 648.889 kb on - strand, within SO0621 at 648.889 kb on - strand, within SO0621 at 648.889 kb on - strand, within SO0621 at 649.032 kb on + strand, within SO0621 at 649.053 kb on + strand, within SO0621 at 649.061 kb on - strand, within SO0621 at 649.061 kb on - strand, within SO0621 at 649.126 kb on + strand, within SO0621 at 649.134 kb on - strand, within SO0621 at 649.180 kb on + strand, within SO0621 at 649.411 kb on - strand, within SO0621 at 649.526 kb on + strand, within SO0621 at 649.564 kb on - strand at 649.607 kb on + strand at 649.607 kb on + strand at 649.689 kb on - strand at 649.753 kb on - strand, within SO0622 at 649.857 kb on + strand, within SO0622 at 649.857 kb on + strand, within SO0622 at 649.928 kb on - strand, within SO0622 at 650.065 kb on + strand, within SO0622 at 650.065 kb on + strand, within SO0622 at 650.109 kb on + strand, within SO0622 at 650.299 kb on - strand at 650.301 kb on + strand at 650.366 kb on - strand, within SO0623 at 650.376 kb on - strand, within SO0623 at 650.455 kb on - strand, within SO0623 at 650.520 kb on - strand, within SO0623 at 650.520 kb on - strand, within SO0623 at 650.540 kb on - strand, within SO0623 at 650.555 kb on - strand, within SO0623 at 650.555 kb on - strand, within SO0623 at 650.583 kb on - strand, within SO0623 at 650.619 kb on + strand, within SO0623 at 650.620 kb on + strand, within SO0623 at 650.720 kb on + strand at 650.823 kb on + strand, within crp at 650.892 kb on + strand, within crp at 650.984 kb on + strand, within crp at 650.992 kb on - strand, within crp at 650.994 kb on + strand, within crp at 651.105 kb on - strand, within crp at 651.112 kb on + strand, within crp at 651.119 kb on + strand, within crp at 651.120 kb on - strand, within crp at 651.125 kb on - strand, within crp at 651.127 kb on - strand, within crp at 651.152 kb on + strand, within crp at 651.192 kb on - strand, within crp at 651.192 kb on - strand, within crp at 651.225 kb on - strand, within crp at 651.254 kb on + strand, within crp at 651.254 kb on + strand, within crp at 651.254 kb on + strand, within crp at 651.262 kb on - strand, within crp at 651.270 kb on + strand, within crp at 651.270 kb on + strand, within crp at 651.270 kb on + strand, within crp at 651.270 kb on + strand, within crp at 651.278 kb on - strand, within crp at 651.278 kb on - strand, within crp at 651.278 kb on - strand, within crp at 651.280 kb on + strand, within crp at 651.285 kb on + strand, within crp at 651.285 kb on + strand, within crp at 651.292 kb on - strand, within crp
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 648,737 + SO0621 0.30 -0.6 648,866 + SO0621 0.40 +0.2 648,874 + SO0621 0.41 -2.0 648,888 - SO0621 0.42 +0.0 648,889 - SO0621 0.42 +0.4 648,889 - SO0621 0.42 -0.1 648,889 - SO0621 0.42 -0.6 649,032 + SO0621 0.52 +0.1 649,053 + SO0621 0.54 -0.7 649,061 - SO0621 0.55 +0.2 649,061 - SO0621 0.55 -0.4 649,126 + SO0621 0.60 -0.2 649,134 - SO0621 0.60 -0.1 649,180 + SO0621 0.64 +0.1 649,411 - SO0621 0.81 +0.4 649,526 + SO0621 0.90 -1.3 649,564 - +0.9 649,607 + -0.7 649,607 + -0.4 649,689 - -0.4 649,753 - SO0622 0.14 -0.7 649,857 + SO0622 0.29 -1.8 649,857 + SO0622 0.29 -0.6 649,928 - SO0622 0.40 +0.2 650,065 + SO0622 0.60 -1.3 650,065 + SO0622 0.60 -0.8 650,109 + SO0622 0.67 -0.5 650,299 - -0.3 650,301 + +0.1 650,366 - SO0623 0.15 -0.5 650,376 - SO0623 0.18 +0.3 650,455 - SO0623 0.40 -0.3 650,520 - SO0623 0.59 +2.7 650,520 - SO0623 0.59 -0.8 650,540 - SO0623 0.65 +0.3 650,555 - SO0623 0.69 +0.2 650,555 - SO0623 0.69 +0.4 650,583 - SO0623 0.77 -0.5 650,619 + SO0623 0.87 -0.5 650,620 + SO0623 0.88 +0.4 650,720 + +0.9 650,823 + crp SO0624 0.12 +0.0 650,892 + crp SO0624 0.23 +0.0 650,984 + crp SO0624 0.38 -1.7 650,992 - crp SO0624 0.39 -0.6 650,994 + crp SO0624 0.39 +0.7 651,105 - crp SO0624 0.57 +0.3 651,112 + crp SO0624 0.58 +0.3 651,119 + crp SO0624 0.59 -0.2 651,120 - crp SO0624 0.59 -1.7 651,125 - crp SO0624 0.60 -0.2 651,127 - crp SO0624 0.60 -0.5 651,152 + crp SO0624 0.64 -1.5 651,192 - crp SO0624 0.70 -0.3 651,192 - crp SO0624 0.70 -0.2 651,225 - crp SO0624 0.75 -0.9 651,254 + crp SO0624 0.80 -0.0 651,254 + crp SO0624 0.80 -0.1 651,254 + crp SO0624 0.80 -0.6 651,262 - crp SO0624 0.81 -1.0 651,270 + crp SO0624 0.83 +0.1 651,270 + crp SO0624 0.83 +0.3 651,270 + crp SO0624 0.83 +0.1 651,270 + crp SO0624 0.83 +0.1 651,278 - crp SO0624 0.84 +0.0 651,278 - crp SO0624 0.84 -0.3 651,278 - crp SO0624 0.84 -0.9 651,280 + crp SO0624 0.84 +0.0 651,285 + crp SO0624 0.85 +0.5 651,285 + crp SO0624 0.85 -1.7 651,292 - crp SO0624 0.86 +0.3
Or see this region's nucleotide sequence