Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p00350

Experiment: m.b. Nickel (II) chloride 0.625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_262p00330 and PGA1_262p00340 overlap by 4 nucleotidesPGA1_262p00340 and PGA1_262p00350 overlap by 8 nucleotidesPGA1_262p00350 and PGA1_262p00360 are separated by 176 nucleotides PGA1_262p00330: PGA1_262p00330 - oligopeptide ABC transporter, ATP binding protein, at 36,886 to 37,884 _262p00330 PGA1_262p00340: PGA1_262p00340 - oligopeptide ABC transporter, ATP binding protein, at 37,881 to 38,879 _262p00340 PGA1_262p00350: PGA1_262p00350 - metallopeptidase, family M24, at 38,872 to 40,674 _262p00350 PGA1_262p00360: PGA1_262p00360 - methyl-accepting chemotaxis protein, at 40,851 to 43,001 _262p00360 Position (kb) 38 39 40 41Strain fitness (log2 ratio) -2 -1 0 1 2at 37.878 kb on + strandat 37.993 kb on + strand, within PGA1_262p00340at 38.079 kb on - strand, within PGA1_262p00340at 38.240 kb on + strand, within PGA1_262p00340at 38.546 kb on + strand, within PGA1_262p00340at 38.619 kb on - strand, within PGA1_262p00340at 38.730 kb on + strand, within PGA1_262p00340at 38.730 kb on + strand, within PGA1_262p00340at 38.738 kb on - strand, within PGA1_262p00340at 39.013 kb on + strandat 39.021 kb on - strandat 39.104 kb on + strand, within PGA1_262p00350at 39.147 kb on + strand, within PGA1_262p00350at 39.169 kb on + strand, within PGA1_262p00350at 39.210 kb on - strand, within PGA1_262p00350at 39.284 kb on - strand, within PGA1_262p00350at 39.471 kb on - strand, within PGA1_262p00350at 39.508 kb on - strand, within PGA1_262p00350at 39.591 kb on + strand, within PGA1_262p00350at 39.609 kb on - strand, within PGA1_262p00350at 39.666 kb on - strand, within PGA1_262p00350at 39.666 kb on - strand, within PGA1_262p00350at 39.758 kb on - strand, within PGA1_262p00350at 39.775 kb on + strand, within PGA1_262p00350at 39.775 kb on + strand, within PGA1_262p00350at 39.794 kb on - strand, within PGA1_262p00350at 39.843 kb on + strand, within PGA1_262p00350at 39.848 kb on + strand, within PGA1_262p00350at 39.866 kb on - strand, within PGA1_262p00350at 39.897 kb on - strand, within PGA1_262p00350at 40.043 kb on - strand, within PGA1_262p00350at 40.095 kb on - strand, within PGA1_262p00350at 40.235 kb on + strand, within PGA1_262p00350at 40.339 kb on + strand, within PGA1_262p00350at 40.379 kb on - strand, within PGA1_262p00350at 40.397 kb on + strand, within PGA1_262p00350at 40.439 kb on - strand, within PGA1_262p00350at 40.522 kb on + strandat 40.547 kb on + strandat 40.701 kb on + strandat 40.701 kb on + strandat 40.701 kb on + strandat 40.701 kb on + strandat 40.747 kb on + strandat 40.747 kb on + strandat 40.747 kb on + strandat 40.755 kb on - strandat 40.755 kb on - strandat 40.783 kb on + strandat 40.808 kb on - strandat 40.862 kb on + strandat 41.010 kb on - strandat 41.084 kb on - strand, within PGA1_262p00360at 41.139 kb on + strand, within PGA1_262p00360at 41.218 kb on + strand, within PGA1_262p00360at 41.226 kb on - strand, within PGA1_262p00360at 41.438 kb on + strand, within PGA1_262p00360at 41.624 kb on + strand, within PGA1_262p00360at 41.624 kb on + strand, within PGA1_262p00360

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 0.625 mM
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37,878 + +2.4
37,993 + PGA1_262p00340 0.11 -0.8
38,079 - PGA1_262p00340 0.20 -0.4
38,240 + PGA1_262p00340 0.36 -0.3
38,546 + PGA1_262p00340 0.67 +0.2
38,619 - PGA1_262p00340 0.74 -0.7
38,730 + PGA1_262p00340 0.85 +1.1
38,730 + PGA1_262p00340 0.85 +1.0
38,738 - PGA1_262p00340 0.86 -0.6
39,013 + +1.8
39,021 - +0.3
39,104 + PGA1_262p00350 0.13 +1.0
39,147 + PGA1_262p00350 0.15 +0.8
39,169 + PGA1_262p00350 0.16 +0.4
39,210 - PGA1_262p00350 0.19 -0.1
39,284 - PGA1_262p00350 0.23 +1.7
39,471 - PGA1_262p00350 0.33 +0.3
39,508 - PGA1_262p00350 0.35 +1.7
39,591 + PGA1_262p00350 0.40 -0.7
39,609 - PGA1_262p00350 0.41 +0.5
39,666 - PGA1_262p00350 0.44 -1.1
39,666 - PGA1_262p00350 0.44 +0.6
39,758 - PGA1_262p00350 0.49 -0.1
39,775 + PGA1_262p00350 0.50 -2.0
39,775 + PGA1_262p00350 0.50 +1.1
39,794 - PGA1_262p00350 0.51 -0.3
39,843 + PGA1_262p00350 0.54 +0.2
39,848 + PGA1_262p00350 0.54 +0.0
39,866 - PGA1_262p00350 0.55 +0.3
39,897 - PGA1_262p00350 0.57 +0.3
40,043 - PGA1_262p00350 0.65 +1.4
40,095 - PGA1_262p00350 0.68 +0.3
40,235 + PGA1_262p00350 0.76 +0.0
40,339 + PGA1_262p00350 0.81 -0.3
40,379 - PGA1_262p00350 0.84 -1.3
40,397 + PGA1_262p00350 0.85 +1.4
40,439 - PGA1_262p00350 0.87 +0.4
40,522 + +1.6
40,547 + +0.2
40,701 + -1.3
40,701 + -0.8
40,701 + -0.8
40,701 + -0.3
40,747 + +0.5
40,747 + +0.5
40,747 + +1.9
40,755 - -1.0
40,755 - -0.9
40,783 + +0.8
40,808 - +0.6
40,862 + -0.1
41,010 - +0.0
41,084 - PGA1_262p00360 0.11 +0.9
41,139 + PGA1_262p00360 0.13 -0.4
41,218 + PGA1_262p00360 0.17 +0.1
41,226 - PGA1_262p00360 0.17 -0.3
41,438 + PGA1_262p00360 0.27 +1.3
41,624 + PGA1_262p00360 0.36 +0.4
41,624 + PGA1_262p00360 0.36 -0.7

Or see this region's nucleotide sequence