Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3571

Experiment: Glucose defined 30C timecourse1 timepoint 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3569 and Psest_3570 overlap by 4 nucleotidesPsest_3570 and Psest_3571 are separated by 183 nucleotidesPsest_3571 and Psest_3572 are separated by 71 nucleotidesPsest_3572 and Psest_3573 overlap by 8 nucleotides Psest_3569: Psest_3569 - Biopolymer transport proteins, at 3,743,165 to 3,744,511 _3569 Psest_3570: Psest_3570 - Protein of unknown function (DUF3450)., at 3,744,508 to 3,745,293 _3570 Psest_3571: Psest_3571 - Outer membrane protein W, at 3,745,477 to 3,746,154 _3571 Psest_3572: Psest_3572 - Nucleoside-diphosphate-sugar epimerases, at 3,746,226 to 3,747,149 _3572 Psest_3573: Psest_3573 - dTDP-4-dehydrorhamnose reductase, at 3,747,142 to 3,748,026 _3573 Position (kb) 3745 3746 3747Strain fitness (log2 ratio) -2 -1 0 1 2at 3745.603 kb on - strand, within Psest_3571at 3745.603 kb on - strand, within Psest_3571at 3745.612 kb on - strand, within Psest_3571at 3745.612 kb on - strand, within Psest_3571at 3745.693 kb on + strand, within Psest_3571at 3745.693 kb on + strand, within Psest_3571at 3745.693 kb on + strand, within Psest_3571at 3745.724 kb on + strand, within Psest_3571at 3745.725 kb on - strand, within Psest_3571at 3745.834 kb on + strand, within Psest_3571at 3745.834 kb on + strand, within Psest_3571at 3745.834 kb on + strand, within Psest_3571at 3745.834 kb on + strand, within Psest_3571at 3745.834 kb on + strand, within Psest_3571at 3745.834 kb on + strand, within Psest_3571at 3745.834 kb on + strand, within Psest_3571at 3745.834 kb on + strand, within Psest_3571at 3745.835 kb on - strand, within Psest_3571at 3745.835 kb on - strand, within Psest_3571at 3745.835 kb on - strand, within Psest_3571at 3745.835 kb on - strand, within Psest_3571at 3745.835 kb on - strand, within Psest_3571at 3745.849 kb on - strand, within Psest_3571at 3745.888 kb on - strand, within Psest_3571at 3745.891 kb on + strand, within Psest_3571at 3745.891 kb on + strand, within Psest_3571at 3745.891 kb on + strand, within Psest_3571at 3745.892 kb on - strand, within Psest_3571at 3745.892 kb on - strand, within Psest_3571at 3745.892 kb on - strand, within Psest_3571at 3745.988 kb on + strand, within Psest_3571at 3745.989 kb on - strand, within Psest_3571at 3745.999 kb on + strand, within Psest_3571at 3745.999 kb on + strand, within Psest_3571at 3745.999 kb on + strand, within Psest_3571at 3745.999 kb on + strand, within Psest_3571at 3745.999 kb on + strand, within Psest_3571at 3745.999 kb on + strand, within Psest_3571at 3746.000 kb on - strand, within Psest_3571at 3746.000 kb on - strand, within Psest_3571at 3746.041 kb on + strand, within Psest_3571at 3746.041 kb on + strand, within Psest_3571at 3746.041 kb on + strand, within Psest_3571at 3746.041 kb on + strand, within Psest_3571at 3746.041 kb on + strand, within Psest_3571at 3746.042 kb on - strand, within Psest_3571at 3746.112 kb on - strandat 3746.125 kb on + strandat 3746.125 kb on + strandat 3746.125 kb on + strandat 3746.126 kb on - strandat 3746.126 kb on - strandat 3746.196 kb on + strandat 3746.248 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucose defined 30C timecourse1 timepoint 3
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3,745,603 - Psest_3571 0.19 -0.3
3,745,603 - Psest_3571 0.19 -0.3
3,745,612 - Psest_3571 0.20 +0.1
3,745,612 - Psest_3571 0.20 -1.1
3,745,693 + Psest_3571 0.32 -1.1
3,745,693 + Psest_3571 0.32 +0.2
3,745,693 + Psest_3571 0.32 +1.2
3,745,724 + Psest_3571 0.36 -0.0
3,745,725 - Psest_3571 0.37 +0.1
3,745,834 + Psest_3571 0.53 -0.9
3,745,834 + Psest_3571 0.53 -0.2
3,745,834 + Psest_3571 0.53 -0.3
3,745,834 + Psest_3571 0.53 -0.5
3,745,834 + Psest_3571 0.53 +0.3
3,745,834 + Psest_3571 0.53 -0.6
3,745,834 + Psest_3571 0.53 +0.4
3,745,834 + Psest_3571 0.53 +0.5
3,745,835 - Psest_3571 0.53 -0.3
3,745,835 - Psest_3571 0.53 +0.6
3,745,835 - Psest_3571 0.53 +0.6
3,745,835 - Psest_3571 0.53 +0.5
3,745,835 - Psest_3571 0.53 +0.0
3,745,849 - Psest_3571 0.55 +0.1
3,745,888 - Psest_3571 0.61 -0.1
3,745,891 + Psest_3571 0.61 -0.3
3,745,891 + Psest_3571 0.61 -0.1
3,745,891 + Psest_3571 0.61 +0.5
3,745,892 - Psest_3571 0.61 +0.5
3,745,892 - Psest_3571 0.61 -1.1
3,745,892 - Psest_3571 0.61 +0.2
3,745,988 + Psest_3571 0.75 -1.2
3,745,989 - Psest_3571 0.76 +1.4
3,745,999 + Psest_3571 0.77 +0.1
3,745,999 + Psest_3571 0.77 -0.1
3,745,999 + Psest_3571 0.77 -0.2
3,745,999 + Psest_3571 0.77 -1.4
3,745,999 + Psest_3571 0.77 -1.5
3,745,999 + Psest_3571 0.77 -0.1
3,746,000 - Psest_3571 0.77 -0.2
3,746,000 - Psest_3571 0.77 -0.1
3,746,041 + Psest_3571 0.83 +0.1
3,746,041 + Psest_3571 0.83 +0.7
3,746,041 + Psest_3571 0.83 -0.6
3,746,041 + Psest_3571 0.83 +0.2
3,746,041 + Psest_3571 0.83 -0.0
3,746,042 - Psest_3571 0.83 -0.1
3,746,112 - +2.3
3,746,125 + -0.3
3,746,125 + -0.4
3,746,125 + -0.6
3,746,126 - -1.9
3,746,126 - -0.1
3,746,196 + -0.2
3,746,248 - -0.4

Or see this region's nucleotide sequence