Experiment: Glucose defined 30C timecourse1 timepoint 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1038 and Psest_1039 are separated by 153 nucleotides Psest_1039 and Psest_1040 are separated by 54 nucleotides
Psest_1038: Psest_1038 - ketol-acid reductoisomerase, at 1,123,817 to 1,124,833
_1038
Psest_1039: Psest_1039 - CDP-diacylglycerol--serine O-phosphatidyltransferase, at 1,124,987 to 1,125,826
_1039
Psest_1040: Psest_1040 - Sulfite oxidase and related enzymes, at 1,125,881 to 1,126,888
_1040
Position (kb)
1124
1125
1126 Strain fitness (log2 ratio)
-2
-1
0
1 at 1124.902 kb on + strand at 1124.962 kb on + strand at 1124.962 kb on + strand at 1124.962 kb on + strand at 1124.971 kb on + strand at 1124.971 kb on + strand at 1124.971 kb on + strand at 1126.151 kb on + strand, within Psest_1040 at 1126.151 kb on + strand, within Psest_1040 at 1126.152 kb on - strand, within Psest_1040 at 1126.496 kb on + strand, within Psest_1040 at 1126.496 kb on + strand, within Psest_1040 at 1126.496 kb on + strand, within Psest_1040 at 1126.497 kb on - strand, within Psest_1040 at 1126.497 kb on - strand, within Psest_1040 at 1126.555 kb on + strand, within Psest_1040 at 1126.555 kb on + strand, within Psest_1040 at 1126.555 kb on + strand, within Psest_1040 at 1126.556 kb on - strand, within Psest_1040 at 1126.559 kb on + strand, within Psest_1040 at 1126.559 kb on + strand, within Psest_1040 at 1126.560 kb on - strand, within Psest_1040 at 1126.560 kb on - strand, within Psest_1040 at 1126.560 kb on - strand, within Psest_1040 at 1126.560 kb on - strand, within Psest_1040 at 1126.560 kb on - strand, within Psest_1040 at 1126.560 kb on - strand, within Psest_1040 at 1126.560 kb on - strand, within Psest_1040 at 1126.619 kb on + strand, within Psest_1040 at 1126.619 kb on + strand, within Psest_1040 at 1126.662 kb on + strand, within Psest_1040 at 1126.662 kb on + strand, within Psest_1040 at 1126.718 kb on + strand, within Psest_1040 at 1126.718 kb on + strand, within Psest_1040 at 1126.718 kb on + strand, within Psest_1040 at 1126.741 kb on - strand, within Psest_1040 at 1126.786 kb on + strand, within Psest_1040 at 1126.786 kb on + strand, within Psest_1040 at 1126.787 kb on - strand, within Psest_1040
Per-strain Table
Position Strand Gene LocusTag Fraction Glucose defined 30C timecourse1 timepoint 3 remove 1,124,902 + +0.8 1,124,962 + +0.3 1,124,962 + +0.6 1,124,962 + -1.4 1,124,971 + +0.1 1,124,971 + +0.9 1,124,971 + +0.2 1,126,151 + Psest_1040 0.27 -0.1 1,126,151 + Psest_1040 0.27 +0.3 1,126,152 - Psest_1040 0.27 -0.5 1,126,496 + Psest_1040 0.61 -1.8 1,126,496 + Psest_1040 0.61 +0.2 1,126,496 + Psest_1040 0.61 -1.3 1,126,497 - Psest_1040 0.61 -0.5 1,126,497 - Psest_1040 0.61 -0.4 1,126,555 + Psest_1040 0.67 +0.1 1,126,555 + Psest_1040 0.67 -1.0 1,126,555 + Psest_1040 0.67 -0.6 1,126,556 - Psest_1040 0.67 +0.2 1,126,559 + Psest_1040 0.67 -0.1 1,126,559 + Psest_1040 0.67 -0.2 1,126,560 - Psest_1040 0.67 -0.4 1,126,560 - Psest_1040 0.67 -0.1 1,126,560 - Psest_1040 0.67 -1.3 1,126,560 - Psest_1040 0.67 -0.2 1,126,560 - Psest_1040 0.67 +0.3 1,126,560 - Psest_1040 0.67 +0.6 1,126,560 - Psest_1040 0.67 +0.1 1,126,619 + Psest_1040 0.73 -0.2 1,126,619 + Psest_1040 0.73 +0.2 1,126,662 + Psest_1040 0.77 +0.9 1,126,662 + Psest_1040 0.77 +1.0 1,126,718 + Psest_1040 0.83 -0.1 1,126,718 + Psest_1040 0.83 +0.1 1,126,718 + Psest_1040 0.83 +0.2 1,126,741 - Psest_1040 0.85 +0.6 1,126,786 + Psest_1040 0.90 -0.0 1,126,786 + Psest_1040 0.90 +0.8 1,126,787 - Psest_1040 0.90 +1.2
Or see this region's nucleotide sequence