Strain Fitness in Shewanella oneidensis MR-1 around SO4587

Experiment: Gentamicin 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Gentamicin 0.005 mg/ml
4,782,634	-				-1.3
4,782,634	-				-0.7
4,782,698	-				-2.3
4,782,707	-				-3.8
4,782,825	+				+0.7
4,782,834	-				-1.4
4,782,854	+				-0.4
4,782,912	-				-0.9
4,782,990	-		SO4587	0.22	-0.4
4,783,004	+		SO4587	0.25	-1.6
4,783,030	+		SO4587	0.29	-1.3
4,783,053	+		SO4587	0.33	-2.4
4,783,085	-		SO4587	0.39	-1.0
4,783,091	-		SO4587	0.40	-1.5
4,783,098	+		SO4587	0.41	-0.2
4,783,106	-		SO4587	0.43	-1.2
4,783,106	-		SO4587	0.43	-0.9
4,783,106	-		SO4587	0.43	-1.2
4,783,106	-		SO4587	0.43	-0.9
4,783,133	+		SO4587	0.47	+1.2
4,783,271	+		SO4587	0.71	-1.1
4,783,293	-		SO4587	0.75	-1.3
4,783,377	-				-1.7
4,783,403	-				+1.0
4,783,421	+				-0.2
4,783,470	-		SO4588	0.12	-1.6
4,783,472	-		SO4588	0.13	+0.0
4,783,491	-		SO4588	0.20	-0.1
4,783,552	+		SO4588	0.41	-0.2
4,783,575	+		SO4588	0.49	+0.5
4,783,642	-		SO4588	0.73	+0.3
4,783,646	+		SO4588	0.74	+0.1
4,783,646	+		SO4588	0.74	-0.0
4,783,654	-		SO4588	0.77	-0.3
4,783,654	-		SO4588	0.77	+0.2
4,783,691	+				+0.3
4,783,691	-				+0.1
4,783,758	+				+0.5
4,783,889	+		SO4589	0.22	+0.0
4,783,979	+		SO4589	0.31	-0.2
4,784,009	+		SO4589	0.34	-0.1
4,784,027	-		SO4589	0.36	-0.0
4,784,054	+		SO4589	0.39	+0.3
4,784,069	+		SO4589	0.40	-0.2
4,784,069	+		SO4589	0.40	-0.4
4,784,069	+		SO4589	0.40	+2.8
4,784,069	+		SO4589	0.40	+0.8
4,784,069	+		SO4589	0.40	-0.6
4,784,077	-		SO4589	0.41	+0.2
4,784,136	-		SO4589	0.47	+0.2
4,784,213	+		SO4589	0.55	+0.6
4,784,259	-		SO4589	0.59	-0.1
4,784,268	-		SO4589	0.60	+1.6
4,784,280	-		SO4589	0.61	-0.2
4,784,307	+		SO4589	0.64	+0.1
4,784,307	+		SO4589	0.64	-0.1
4,784,307	+		SO4589	0.64	-0.4
4,784,315	-		SO4589	0.65	+0.2
4,784,315	-		SO4589	0.65	+0.1
4,784,368	-		SO4589	0.70	+0.9
4,784,422	+		SO4589	0.76	+0.1
4,784,423	+		SO4589	0.76	+0.4
4,784,430	-		SO4589	0.76	-0.3
4,784,432	-		SO4589	0.77	+0.5