Strain Fitness in Shewanella oneidensis MR-1 around SO4585

Experiment: Gentamicin 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Gentamicin 0.005 mg/ml
4,779,361	+				-1.4
4,779,361	+				-1.1
4,779,369	-				-0.6
4,779,369	-				-0.0
4,779,377	+				-1.0
4,779,423	-	ftsX	SO4584	0.11	-0.5
4,779,513	+	ftsX	SO4584	0.20	-0.4
4,779,555	+	ftsX	SO4584	0.24	-1.5
4,779,555	+	ftsX	SO4584	0.24	-1.1
4,779,563	-	ftsX	SO4584	0.25	-1.5
4,779,570	-	ftsX	SO4584	0.26	-0.8
4,779,574	+	ftsX	SO4584	0.26	-0.4
4,779,582	-	ftsX	SO4584	0.27	-1.2
4,779,602	+	ftsX	SO4584	0.29	-1.2
4,779,708	-	ftsX	SO4584	0.40	-1.0
4,779,742	+	ftsX	SO4584	0.44	-1.3
4,779,808	-	ftsX	SO4584	0.51	-0.5
4,779,847	+	ftsX	SO4584	0.55	-1.4
4,779,849	-	ftsX	SO4584	0.55	-1.5
4,779,890	+	ftsX	SO4584	0.59	+0.6
4,779,890	+	ftsX	SO4584	0.59	-2.0
4,779,890	+	ftsX	SO4584	0.59	-1.9
4,779,898	-	ftsX	SO4584	0.60	-0.8
4,779,898	-	ftsX	SO4584	0.60	-1.0
4,779,898	-	ftsX	SO4584	0.60	-1.7
4,779,898	-	ftsX	SO4584	0.60	-0.7
4,779,898	-	ftsX	SO4584	0.60	-1.1
4,779,898	-	ftsX	SO4584	0.60	-0.9
4,779,904	-	ftsX	SO4584	0.60	-1.6
4,779,953	+	ftsX	SO4584	0.66	-0.4
4,779,962	-	ftsX	SO4584	0.66	+0.1
4,780,120	+	ftsX	SO4584	0.83	-0.7
4,780,121	+	ftsX	SO4584	0.83	-1.2
4,780,121	+	ftsX	SO4584	0.83	-0.9
4,780,128	-	ftsX	SO4584	0.84	-0.5
4,780,128	-	ftsX	SO4584	0.84	-0.8
4,780,146	-	ftsX	SO4584	0.86	+0.2
4,780,193	+				-1.4
4,780,288	+				+0.2
4,780,318	+				-1.0
4,780,318	-				+1.1
4,780,338	+				-1.2
4,780,345	+				-2.4
4,780,353	-	ftsE	SO4585	0.10	-3.1
4,780,370	-	ftsE	SO4585	0.13	-1.7
4,780,372	-	ftsE	SO4585	0.13	-0.5
4,780,470	+	ftsE	SO4585	0.27	-1.4
4,780,551	-	ftsE	SO4585	0.38	-0.8
4,780,552	+	ftsE	SO4585	0.38	-1.4
4,780,562	+	ftsE	SO4585	0.40	-0.4
4,780,570	-	ftsE	SO4585	0.41	-0.9
4,780,570	-	ftsE	SO4585	0.41	-2.3
4,780,669	-	ftsE	SO4585	0.55	-0.5
4,780,675	+	ftsE	SO4585	0.56	-0.6
4,780,683	-	ftsE	SO4585	0.57	-1.2
4,780,683	-	ftsE	SO4585	0.57	-1.2
4,780,767	+	ftsE	SO4585	0.69	-1.0
4,780,858	+	ftsE	SO4585	0.82	-0.9
4,780,862	-	ftsE	SO4585	0.83	-1.8
4,780,866	-	ftsE	SO4585	0.83	-0.7
4,780,957	-				-0.4
4,780,966	-				-1.3