Strain Fitness in Shewanella oneidensis MR-1 around SO4510

Experiment: Gentamicin 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Gentamicin 0.005 mg/ml
4,702,383	-		SO4509	0.67	+0.6
4,702,390	-		SO4509	0.67	-0.0
4,702,554	-		SO4509	0.73	+0.7
4,702,692	+		SO4509	0.78	+0.9
4,702,727	+		SO4509	0.79	+0.6
4,702,739	+		SO4509	0.79	+0.3
4,702,739	+		SO4509	0.79	+0.4
4,702,739	+		SO4509	0.79	+0.8
4,702,739	+		SO4509	0.79	+0.6
4,702,739	+		SO4509	0.79	+0.3
4,702,739	+		SO4509	0.79	+0.2
4,702,747	-		SO4509	0.80	+0.8
4,702,747	-		SO4509	0.80	-0.1
4,702,747	-		SO4509	0.80	-0.7
4,702,781	+		SO4509	0.81	+0.4
4,702,796	+		SO4509	0.81	+0.2
4,702,798	+		SO4509	0.81	-0.1
4,702,798	+		SO4509	0.81	-0.1
4,702,806	-		SO4509	0.82	-0.4
4,702,831	+		SO4509	0.83	+0.1
4,702,849	+		SO4509	0.83	+0.6
4,702,912	+		SO4509	0.85	+0.6
4,702,959	+		SO4509	0.87	+1.2
4,702,991	+		SO4509	0.88	+1.0
4,703,071	-				+0.4
4,703,083	-				+0.7
4,703,188	-				+0.2
4,703,320	+				+0.2
4,703,521	+	fdhB-1	SO4510	0.28	+0.3
4,703,521	+	fdhB-1	SO4510	0.28	+1.6
4,703,527	-	fdhB-1	SO4510	0.29	+1.6
4,703,529	-	fdhB-1	SO4510	0.29	+0.4
4,703,570	-	fdhB-1	SO4510	0.36	+0.7
4,703,696	-	fdhB-1	SO4510	0.57	+1.0
4,703,810	+	fdhB-1	SO4510	0.77	+0.4
4,703,810	+	fdhB-1	SO4510	0.77	+1.1
4,703,810	+	fdhB-1	SO4510	0.77	+0.7
4,703,817	+	fdhB-1	SO4510	0.78	+1.3
4,703,818	-	fdhB-1	SO4510	0.78	+0.2
4,703,825	-	fdhB-1	SO4510	0.79	+0.5
4,703,880	+	fdhB-1	SO4510	0.88	+0.6
4,703,900	+				+0.5
4,703,934	-				+0.4
4,703,961	+				+0.2
4,703,973	+				+1.2
4,703,975	-				+0.4
4,703,981	-				+0.3
4,703,981	-				+1.3
4,703,981	-				-0.9
4,703,981	-				+0.3
4,704,041	+				+0.4
4,704,071	-				+0.5
4,704,076	-				+0.9
4,704,087	+				-0.3
4,704,093	+				-0.3
4,704,158	+		SO4511	0.15	-0.0
4,704,199	-		SO4511	0.19	+1.3
4,704,284	+		SO4511	0.28	-0.1
4,704,438	+		SO4511	0.43	+0.6
4,704,511	+		SO4511	0.50	+0.8
4,704,537	+		SO4511	0.52	+0.6
4,704,550	+		SO4511	0.54	+0.6
4,704,550	+		SO4511	0.54	-0.2
4,704,553	-		SO4511	0.54	-0.1
4,704,563	-		SO4511	0.55	+0.6
4,704,596	+		SO4511	0.58	-0.1
4,704,618	+		SO4511	0.60	+0.5
4,704,618	+		SO4511	0.60	+0.1
4,704,626	-		SO4511	0.61	+1.1
4,704,626	-		SO4511	0.61	+0.4
4,704,651	-		SO4511	0.63	+0.4
4,704,679	+		SO4511	0.66	+0.8
4,704,776	-		SO4511	0.76	+0.9
4,704,798	+		SO4511	0.78	+0.3
4,704,798	+		SO4511	0.78	+0.0
4,704,798	+		SO4511	0.78	+0.5
4,704,798	+		SO4511	0.78	+0.3
4,704,803	+		SO4511	0.78	-0.1
4,704,803	+		SO4511	0.78	-1.5
4,704,806	-		SO4511	0.78	+0.2
4,704,806	-		SO4511	0.78	+0.3
4,704,811	-		SO4511	0.79	-1.1
4,704,826	-		SO4511	0.80	+0.1
4,704,842	+		SO4511	0.82	+0.2
4,704,879	-		SO4511	0.86	+1.0
4,704,925	-				+0.2
4,704,934	-				+0.3