Strain Fitness in Shewanella oneidensis MR-1 around SO4157

Experiment: Gentamicin 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Gentamicin 0.005 mg/ml
4,331,098	+		SO4155	0.60	+0.7
4,331,098	+		SO4155	0.60	-0.1
4,331,098	+		SO4155	0.60	-0.2
4,331,106	-		SO4155	0.60	-0.4
4,331,106	-		SO4155	0.60	+0.5
4,331,180	+		SO4155	0.65	-0.7
4,331,457	+		SO4155	0.80	+0.4
4,331,469	+		SO4155	0.81	+0.4
4,331,469	+		SO4155	0.81	+0.8
4,331,469	+		SO4155	0.81	+1.0
4,331,469	+		SO4155	0.81	-0.1
4,331,500	+		SO4155	0.82	-0.5
4,331,500	+		SO4155	0.82	-0.2
4,331,508	-		SO4155	0.83	-0.2
4,331,508	-		SO4155	0.83	+0.4
4,331,508	-		SO4155	0.83	-0.3
4,331,508	-		SO4155	0.83	-0.1
4,331,587	-		SO4155	0.87	-0.1
4,331,623	-		SO4155	0.89	+2.2
4,331,691	-				+2.4
4,331,747	-				+0.3
4,331,757	-				+0.9
4,331,788	-				+0.3
4,331,795	-				-0.9
4,331,800	+				-1.6
4,331,803	-				+0.5
4,331,821	+				+0.2
4,331,821	+				-0.8
4,331,821	+				-0.3
4,331,828	+				-1.2
4,331,829	-				+0.6
4,331,829	-				+0.3
4,331,829	-				-0.5
4,331,829	-				+0.3
4,331,829	-				-0.1
4,331,877	+				+1.0
4,331,885	-				+0.3
4,331,981	+				-0.2
4,331,989	-				+0.5
4,331,994	-				+0.8
4,331,996	-				-0.1
4,332,076	+				+0.7
4,332,076	+				-0.6
4,332,076	+				+0.4
4,332,076	+				+1.0
4,332,083	-		SO4157	0.10	+0.5
4,332,083	-		SO4157	0.10	+0.0
4,332,084	-		SO4157	0.10	+0.9
4,332,090	-		SO4157	0.11	+0.5
4,332,117	+		SO4157	0.16	+0.4
4,332,118	+		SO4157	0.16	-0.1
4,332,125	-		SO4157	0.17	+0.2
4,332,351	+		SO4157	0.54	+0.5
4,332,456	+		SO4157	0.71	-0.2
4,332,458	-		SO4157	0.72	+0.1
4,332,464	-		SO4157	0.73	+0.5
4,332,464	-		SO4157	0.73	-0.2
4,332,464	-		SO4157	0.73	+0.9
4,332,471	+		SO4157	0.74	+0.4
4,332,533	+		SO4157	0.84	+0.1
4,332,534	-		SO4157	0.84	+2.1
4,332,583	+				+1.9
4,332,596	-				+0.6
4,332,601	-				+0.4
4,332,609	+				+0.1
4,332,613	-				+0.1
4,332,613	-				+0.1
4,332,632	-				+0.3
4,332,706	-				-0.3
4,332,721	+				+0.8
4,332,728	+				+0.2
4,332,735	+				+0.2
4,332,790	-				+0.4
4,332,799	+				-0.3
4,332,799	+				+0.6
4,332,807	-				+0.4
4,332,817	-				-0.5
4,332,822	+				+0.9
4,332,824	+				+0.1
4,332,911	+				+0.3
4,332,919	-				+0.3
4,333,097	-				-0.2
4,333,106	-				-0.2
4,333,142	-		SO4159	0.12	+0.2
4,333,218	-		SO4159	0.25	+0.4
4,333,236	+		SO4159	0.28	-0.1
4,333,244	-		SO4159	0.29	+0.9
4,333,244	-		SO4159	0.29	+1.1
4,333,289	-		SO4159	0.37	-2.1
4,333,358	+		SO4159	0.49	+0.4
4,333,359	-		SO4159	0.49	-0.3
4,333,369	-		SO4159	0.51	+2.7
4,333,369	-		SO4159	0.51	-0.4
4,333,369	-		SO4159	0.51	+0.2
4,333,369	-		SO4159	0.51	-0.4
4,333,395	-		SO4159	0.55	-0.4
4,333,433	+		SO4159	0.62	+0.5
4,333,622	+				+0.4