Strain Fitness in Shewanella oneidensis MR-1 around SO4094

Experiment: Gentamicin 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Gentamicin 0.005 mg/ml
4,251,311	-		SO4093	0.76	-1.1
4,251,316	-		SO4093	0.76	-0.7
4,251,362	-		SO4093	0.78	-0.1
4,251,368	+		SO4093	0.78	-0.3
4,251,445	+		SO4093	0.80	+0.1
4,251,459	+		SO4093	0.80	-0.7
4,251,465	+		SO4093	0.80	-0.5
4,251,487	+		SO4093	0.81	-0.1
4,251,494	-		SO4093	0.81	-0.8
4,251,581	+		SO4093	0.83	-0.6
4,251,653	+		SO4093	0.84	-0.3
4,251,859	-		SO4093	0.89	-0.7
4,252,063	-				-2.1
4,252,068	+				-0.1
4,252,095	-				-0.5
4,252,107	-				+0.7
4,252,107	-				-0.8
4,252,156	+				-0.2
4,252,189	+				-0.9
4,252,427	-				-0.2
4,252,427	-				-0.3
4,252,430	-				-0.7
4,252,435	+				-3.6
4,252,582	-	cafA	SO4094	0.19	+1.4
4,252,617	+	cafA	SO4094	0.22	-1.8
4,252,625	-	cafA	SO4094	0.22	-1.0
4,252,625	-	cafA	SO4094	0.22	-0.2
4,252,625	-	cafA	SO4094	0.22	+0.4
4,252,625	-	cafA	SO4094	0.22	+0.8
4,252,662	+	cafA	SO4094	0.25	-0.7
4,252,797	-	cafA	SO4094	0.34	+1.4
4,252,869	-	cafA	SO4094	0.39	-1.6
4,252,906	+	cafA	SO4094	0.41	-0.2
4,252,925	+	cafA	SO4094	0.43	-1.2
4,252,990	-	cafA	SO4094	0.47	+0.2
4,252,990	-	cafA	SO4094	0.47	-1.5
4,253,082	+	cafA	SO4094	0.53	-1.9
4,253,221	+	cafA	SO4094	0.63	-0.8
4,253,544	-	cafA	SO4094	0.85	-2.7
4,253,753	+				-1.4
4,253,876	+				-1.9
4,253,968	-				-0.5
4,253,992	+				-0.5
4,253,992	+				+2.0
4,253,992	+				-0.4
4,254,000	-	maf	SO4095	0.10	+0.0
4,254,000	-	maf	SO4095	0.10	-0.9
4,254,000	-	maf	SO4095	0.10	+0.1
4,254,027	+	maf	SO4095	0.15	-3.4
4,254,184	+	maf	SO4095	0.42	-1.2
4,254,184	+	maf	SO4095	0.42	-0.6
4,254,192	-	maf	SO4095	0.43	+0.3
4,254,192	-	maf	SO4095	0.43	+0.1
4,254,192	-	maf	SO4095	0.43	+0.4
4,254,192	-	maf	SO4095	0.43	-1.2
4,254,195	+	maf	SO4095	0.43	-0.8
4,254,405	+	maf	SO4095	0.79	+1.3
4,254,405	+	maf	SO4095	0.79	+2.1
4,254,544	-				+0.8