Strain Fitness in Shewanella oneidensis MR-1 around SO4087

Experiment: Gentamicin 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Gentamicin 0.005 mg/ml
4,239,949	-	chiA	SO4085	0.67	-0.2
4,239,956	+	chiA	SO4085	0.68	-1.3
4,240,045	-	chiA	SO4085	0.72	+0.4
4,240,129	-	chiA	SO4085	0.76	-0.5
4,240,182	-	chiA	SO4085	0.78	+1.2
4,240,270	+	chiA	SO4085	0.82	-0.4
4,240,285	-	chiA	SO4085	0.83	+1.2
4,240,415	+	chiA	SO4085	0.89	+0.0
4,240,417	+	chiA	SO4085	0.89	-0.3
4,240,423	-	chiA	SO4085	0.90	+0.7
4,240,423	-	chiA	SO4085	0.90	-0.9
4,240,423	-	chiA	SO4085	0.90	-0.2
4,240,552	-				-0.6
4,240,631	+				+0.4
4,240,643	+				-0.1
4,240,796	+				-0.3
4,240,801	+				+0.2
4,240,801	+				+0.0
4,240,826	-				-0.2
4,240,982	-		SO4087	0.16	-2.7
4,241,174	+		SO4087	0.33	-1.6
4,241,182	-		SO4087	0.34	-1.5
4,241,182	-		SO4087	0.34	-3.9
4,241,209	-		SO4087	0.36	-3.0
4,241,276	+		SO4087	0.42	-4.3
4,241,380	-		SO4087	0.51	-3.9
4,241,543	+		SO4087	0.66	-4.6
4,241,847	-				-5.2
4,241,864	+				-3.3
4,241,864	+				-1.4
4,241,864	+				-5.6
4,241,872	-				-4.3
4,241,990	+				-5.2
4,242,086	-		SO4088	0.12	-4.0
4,242,222	-		SO4088	0.22	-5.0
4,242,350	-		SO4088	0.32	-2.4
4,242,350	-		SO4088	0.32	-2.9
4,242,350	-		SO4088	0.32	-2.3
4,242,350	-		SO4088	0.32	-0.2
4,242,350	-		SO4088	0.32	-5.3
4,242,350	-		SO4088	0.32	-4.5
4,242,366	+		SO4088	0.33	-3.8
4,242,448	+		SO4088	0.39	-2.6
4,242,458	-		SO4088	0.40	-4.3
4,242,458	-		SO4088	0.40	-4.3
4,242,506	+		SO4088	0.44	-4.0
4,242,514	-		SO4088	0.44	-3.7
4,242,514	-		SO4088	0.44	-1.1
4,242,560	+		SO4088	0.48	-5.1
4,242,627	+		SO4088	0.53	-5.7
4,242,648	-		SO4088	0.55	-3.2
4,242,863	+		SO4088	0.71	-5.8
4,242,863	+		SO4088	0.71	-2.6
4,242,864	+		SO4088	0.71	-5.1
4,242,871	-		SO4088	0.72	-3.4
4,242,871	-		SO4088	0.72	-4.5
4,242,871	-		SO4088	0.72	-2.6
4,242,876	-		SO4088	0.72	-3.1
4,242,929	+		SO4088	0.76	-4.3