Strain Fitness in Shewanella oneidensis MR-1 around SO4014

Experiment: Gentamicin 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Gentamicin 0.005 mg/ml
4,156,410	-		SO4013	0.73	+0.8
4,156,562	+		SO4013	0.82	-0.8
4,156,562	+		SO4013	0.82	+0.2
4,156,685	+		SO4013	0.88	-0.1
4,156,808	-				+0.2
4,156,834	+				-0.2
4,156,948	-				-0.4
4,156,977	+				-0.6
4,156,985	-				-0.2
4,157,033	+				-0.2
4,157,053	-				+0.4
4,157,248	+				-1.0
4,157,248	+				+0.3
4,157,248	+				-1.6
4,157,256	-				+0.3
4,157,278	-				-0.9
4,157,325	-		SO4014	0.10	-0.5
4,157,406	-		SO4014	0.13	-0.6
4,157,406	-		SO4014	0.13	-0.5
4,157,406	-		SO4014	0.13	-1.1
4,157,406	-		SO4014	0.13	-0.6
4,157,406	-		SO4014	0.13	-0.5
4,157,406	-		SO4014	0.13	-0.4
4,157,470	-		SO4014	0.15	-0.7
4,157,629	-		SO4014	0.20	-0.3
4,157,650	+		SO4014	0.21	-0.7
4,157,655	+		SO4014	0.21	+0.3
4,157,923	+		SO4014	0.30	-0.8
4,157,938	-		SO4014	0.30	-0.9
4,157,982	-		SO4014	0.32	-2.0
4,157,984	-		SO4014	0.32	-0.0
4,157,988	+		SO4014	0.32	-0.5
4,158,007	+		SO4014	0.32	-1.2
4,158,007	+		SO4014	0.32	-0.5
4,158,230	+		SO4014	0.40	-0.3
4,158,230	+		SO4014	0.40	-0.1
4,158,244	-		SO4014	0.40	-0.9
4,158,244	-		SO4014	0.40	-0.8
4,158,244	-		SO4014	0.40	-0.9
4,158,244	-		SO4014	0.40	-0.9
4,158,254	-		SO4014	0.40	-0.5
4,158,254	-		SO4014	0.40	-0.2
4,158,254	-		SO4014	0.40	-0.2
4,158,254	-		SO4014	0.40	+0.2
4,158,293	+		SO4014	0.42	-0.5
4,158,460	-		SO4014	0.47	+0.3
4,158,582	+		SO4014	0.51	-0.2
4,158,625	+		SO4014	0.53	+1.4
4,158,634	-		SO4014	0.53	-0.2
4,158,674	-		SO4014	0.54	+0.8
4,158,711	-		SO4014	0.55	-1.5
4,158,756	-		SO4014	0.57	-0.3
4,158,785	-		SO4014	0.58	+0.1
4,158,846	-		SO4014	0.60	-0.2
4,158,846	-		SO4014	0.60	-0.5
4,158,881	-		SO4014	0.61	+0.4
4,158,946	+		SO4014	0.63	-0.4
4,159,048	+		SO4014	0.66	-1.9
4,159,056	-		SO4014	0.67	-1.7
4,159,123	+		SO4014	0.69	+0.4
4,159,123	+		SO4014	0.69	-1.8
4,159,131	-		SO4014	0.69	-0.2
4,159,201	-		SO4014	0.71	-0.7
4,159,265	-		SO4014	0.73	-1.1
4,159,358	-		SO4014	0.76	+0.6
4,159,435	+		SO4014	0.79	-0.4
4,159,440	+		SO4014	0.79	-0.9
4,159,507	+		SO4014	0.81	-1.4
4,159,966	-				+0.1
4,160,019	-				-0.0
4,160,065	+				-0.2
4,160,112	+				-0.3
4,160,120	-				+1.4
4,160,120	-				-0.9
4,160,144	-				+0.0
4,160,156	-				+0.7
4,160,180	-				-0.7
4,160,257	+				-0.6
4,160,265	-				+0.0
4,160,265	-				-0.1
4,160,378	-				+0.3
4,160,398	+				+0.5
4,160,653	+				-0.6
4,160,687	-				-0.5
4,160,688	+				-0.1
4,160,696	-				-0.8
4,160,730	-				+0.9
4,160,775	-				-0.8
4,160,801	+				-1.6
4,160,912	+				+0.2
4,160,931	-				-1.4
4,160,988	-				-0.2
4,160,990	+				-0.2
4,160,992	+				-0.9
4,161,020	-				+0.1
4,161,020	-				+0.2
4,161,020	-				+0.0
4,161,062	-				-0.4