Strain Fitness in Shewanella oneidensis MR-1 around SO4008

Experiment: Gentamicin 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Gentamicin 0.005 mg/ml
4,148,779	-		SO4006	0.82	-0.7
4,148,792	+		SO4006	0.83	-1.4
4,148,962	+				-0.1
4,148,962	+				-1.3
4,148,970	-				-0.6
4,148,985	-				-0.2
4,148,998	-				+0.3
4,149,016	-				-0.7
4,149,082	+				-0.9
4,149,091	-				-0.8
4,149,328	+		SO4007	0.44	-1.1
4,149,329	+		SO4007	0.44	-0.2
4,149,411	-		SO4007	0.56	-0.2
4,149,440	-		SO4007	0.61	-1.7
4,149,557	-		SO4007	0.78	-1.4
4,149,684	-				-1.0
4,149,723	-				-0.2
4,149,825	+				-1.5
4,149,825	-				+0.6
4,149,984	-				-1.9
4,150,065	+		SO4008	0.10	-0.7
4,150,070	+		SO4008	0.10	-0.5
4,150,078	-		SO4008	0.10	-0.6
4,150,078	-		SO4008	0.10	-1.3
4,150,078	-		SO4008	0.10	-1.1
4,150,078	-		SO4008	0.10	-1.4
4,150,079	+		SO4008	0.10	-0.3
4,150,123	+		SO4008	0.12	-1.0
4,150,131	-		SO4008	0.12	-0.8
4,150,131	-		SO4008	0.12	+0.3
4,150,146	+		SO4008	0.12	-2.2
4,150,258	-		SO4008	0.15	-0.7
4,150,630	-		SO4008	0.25	-0.4
4,150,702	+		SO4008	0.27	-0.3
4,150,710	-		SO4008	0.28	-1.4
4,150,821	-		SO4008	0.31	-0.6
4,150,831	-		SO4008	0.31	-1.1
4,150,865	+		SO4008	0.32	-3.1
4,150,873	-		SO4008	0.32	-1.4
4,151,069	-		SO4008	0.37	-0.3
4,151,069	-		SO4008	0.37	-1.6
4,151,105	-		SO4008	0.38	-0.8
4,151,334	-		SO4008	0.45	-0.8
4,151,359	+		SO4008	0.45	-1.0
4,151,427	+		SO4008	0.47	-2.1
4,151,447	-		SO4008	0.48	-2.0
4,151,450	+		SO4008	0.48	-0.3
4,151,458	-		SO4008	0.48	-0.8
4,151,465	+		SO4008	0.48	-1.2
4,151,529	+		SO4008	0.50	-1.4
4,151,687	+		SO4008	0.54	-2.2
4,151,742	+		SO4008	0.56	+1.2
4,151,744	+		SO4008	0.56	-0.9
4,151,744	+		SO4008	0.56	-1.2
4,151,752	-		SO4008	0.56	-2.3
4,151,821	+		SO4008	0.58	-0.9
4,151,824	-		SO4008	0.58	-1.1
4,151,889	+		SO4008	0.60	-1.4
4,151,913	-		SO4008	0.61	-0.5
4,152,139	+		SO4008	0.67	-1.4
4,152,166	+		SO4008	0.68	-1.9
4,152,325	-		SO4008	0.72	-1.3
4,152,325	-		SO4008	0.72	-0.2
4,152,363	+		SO4008	0.73	-0.7
4,152,533	-		SO4008	0.78	-0.9
4,152,556	+		SO4008	0.78	-1.3
4,152,556	+		SO4008	0.78	-1.9
4,152,827	+		SO4008	0.86	-0.8
4,152,828	-		SO4008	0.86	-1.1
4,152,835	-		SO4008	0.86	-1.0
4,152,835	-		SO4008	0.86	-0.2
4,152,837	+		SO4008	0.86	-2.1
4,152,845	-		SO4008	0.86	-1.1
4,152,884	+		SO4008	0.87	-1.2
4,152,892	-		SO4008	0.87	-1.0
4,152,958	+		SO4008	0.89	-1.3
4,152,966	-		SO4008	0.89	-0.5
4,153,000	+				-1.0
4,153,003	-				-0.6
4,153,008	-				+0.4
4,153,072	+				-1.2
4,153,080	-				-1.6
4,153,117	+				-0.6
4,153,117	+				-0.8
4,153,325	+				-2.1
4,153,333	-				-1.8
4,153,492	+				-0.8
4,153,504	+				-1.7
4,153,512	-				+0.0
4,153,526	+				+0.1
4,153,593	-				-0.3
4,153,603	-				+0.0
4,153,613	-				-0.7
4,153,651	-				-0.3
4,153,810	-				-1.8
4,153,828	+				-1.0
4,153,846	-				-0.1
4,153,846	-				-0.4
4,153,866	+				+0.4
4,153,980	-		SO4011	0.13	-1.0
4,153,988	-		SO4011	0.14	-0.7
4,154,003	+		SO4011	0.16	-0.5
4,154,003	+		SO4011	0.16	+0.3
4,154,015	+		SO4011	0.18	-0.6
4,154,023	-		SO4011	0.19	+0.4
4,154,277	-		SO4011	0.55	-1.8
4,154,301	-		SO4011	0.58	-0.2