Strain Fitness in Shewanella oneidensis MR-1 around SO3878

Experiment: Gentamicin 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Gentamicin 0.005 mg/ml
4,024,857	+				-0.7
4,024,869	+				-0.1
4,024,932	+				+0.0
4,024,933	+				-0.2
4,024,940	-				-0.5
4,024,953	+				-0.7
4,024,961	-				+0.2
4,024,961	-				+0.4
4,024,961	-				+0.3
4,024,966	+				-0.3
4,024,990	+				-1.2
4,024,998	-				-0.6
4,025,042	-				-0.2
4,025,044	-				-0.1
4,025,162	+		SO3877	0.26	-0.5
4,025,179	+		SO3877	0.30	-0.2
4,025,184	+		SO3877	0.31	-0.1
4,025,187	-		SO3877	0.32	+0.0
4,025,210	+		SO3877	0.38	-0.3
4,025,210	+		SO3877	0.38	+1.1
4,025,216	+		SO3877	0.39	-0.9
4,025,216	+		SO3877	0.39	-0.1
4,025,216	+		SO3877	0.39	-0.0
4,025,216	+		SO3877	0.39	+0.5
4,025,218	-		SO3877	0.40	-0.3
4,025,218	-		SO3877	0.40	-1.6
4,025,221	+		SO3877	0.40	+0.8
4,025,224	-		SO3877	0.41	+0.5
4,025,226	+		SO3877	0.42	-0.9
4,025,226	+		SO3877	0.42	+0.4
4,025,226	+		SO3877	0.42	-0.2
4,025,226	+		SO3877	0.42	+0.3
4,025,226	+		SO3877	0.42	+1.1
4,025,226	+		SO3877	0.42	-0.4
4,025,226	+		SO3877	0.42	+0.6
4,025,226	+		SO3877	0.42	-1.8
4,025,226	+		SO3877	0.42	-0.8
4,025,226	+		SO3877	0.42	-0.0
4,025,226	+		SO3877	0.42	+0.6
4,025,226	+		SO3877	0.42	+2.0
4,025,226	+		SO3877	0.42	+1.7
4,025,226	+		SO3877	0.42	+0.5
4,025,228	+		SO3877	0.42	+0.2
4,025,228	+		SO3877	0.42	-0.3
4,025,228	+		SO3877	0.42	-0.8
4,025,234	-		SO3877	0.44	-0.6
4,025,234	-		SO3877	0.44	-1.4
4,025,234	-		SO3877	0.44	+0.5
4,025,234	-		SO3877	0.44	-0.7
4,025,234	-		SO3877	0.44	+0.4
4,025,234	-		SO3877	0.44	+0.1
4,025,234	-		SO3877	0.44	-0.6
4,025,234	-		SO3877	0.44	+0.2
4,025,234	-		SO3877	0.44	+0.9
4,025,234	-		SO3877	0.44	+0.6
4,025,234	-		SO3877	0.44	-0.0
4,025,234	-		SO3877	0.44	+0.2
4,025,234	-		SO3877	0.44	+0.1
4,025,234	-		SO3877	0.44	+0.0
4,025,234	-		SO3877	0.44	-1.3
4,025,236	-		SO3877	0.44	-0.9
4,025,236	-		SO3877	0.44	+0.5
4,025,244	-		SO3877	0.46	-1.3
4,025,267	-		SO3877	0.52	-0.2
4,025,316	+		SO3877	0.64	-0.1
4,025,363	+		SO3877	0.76	+0.0
4,025,427	+				-0.0
4,025,430	-				+0.1
4,026,744	+				+0.3
4,026,915	+				-0.3
4,027,063	+		SO3879	0.49	-0.2
4,027,063	+		SO3879	0.49	-0.7
4,027,071	-		SO3879	0.52	-0.6
4,027,071	-		SO3879	0.52	-0.1
4,027,071	-		SO3879	0.52	-0.6
4,027,121	-		SO3879	0.70	-0.9
4,027,155	+		SO3879	0.82	+0.0
4,027,155	+		SO3879	0.82	-0.7
4,027,155	+		SO3879	0.82	+0.1
4,027,162	+		SO3879	0.85	-0.6
4,027,162	+		SO3879	0.85	+0.0
4,027,163	-		SO3879	0.85	-0.5
4,027,165	+		SO3879	0.86	+0.2
4,027,170	+		SO3879	0.88	-0.6
4,027,170	-				+0.8
4,027,170	-		SO3879	0.88	-0.1
4,027,173	-		SO3879	0.89	-0.2