Strain Fitness in Shewanella oneidensis MR-1 around SO3584

Experiment: Gentamicin 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Gentamicin 0.005 mg/ml
3,750,078	-				-0.8
3,750,104	+				-0.5
3,750,104	+				-0.5
3,750,284	+				+0.3
3,750,303	-				-2.0
3,750,314	-				+2.0
3,750,324	+		SO_3583	0.10	-0.4
3,750,465	+		SO_3583	0.30	+3.0
3,750,594	+		SO_3583	0.48	-0.2
3,750,602	-		SO_3583	0.49	-3.0
3,750,602	-		SO_3583	0.49	-0.7
3,750,602	-		SO_3583	0.49	-0.4
3,750,607	-		SO_3583	0.50	-0.1
3,750,640	+		SO_3583	0.55	-0.4
3,750,659	+		SO_3583	0.57	+0.3
3,750,939	-				-0.1
3,751,041	-				-2.7
3,751,100	-		SO3584	0.19	-3.5
3,751,132	+		SO3584	0.24	-1.5
3,751,155	-		SO3584	0.27	-0.9
3,751,206	-		SO3584	0.36	-1.6
3,751,263	-		SO3584	0.45	-0.8
3,751,268	+		SO3584	0.46	-3.7
3,751,301	-		SO3584	0.51	-2.0
3,751,403	-		SO3584	0.67	-2.0
3,751,482	+		SO3584	0.80	-3.1
3,751,482	+		SO3584	0.80	-2.9
3,751,482	+		SO3584	0.80	-0.4
3,751,482	+		SO3584	0.80	-2.4
3,751,490	-		SO3584	0.81	-1.9
3,751,490	-		SO3584	0.81	-1.7
3,751,543	+		SO3584	0.90	-3.3
3,751,543	+		SO3584	0.90	-1.6
3,751,551	-				-2.4
3,751,551	-				-3.3
3,751,615	+				-3.6
3,751,658	-				+0.3
3,751,658	-				-0.2
3,751,812	+				+1.0
3,751,866	+		SO3585	0.19	-0.8
3,751,922	-		SO3585	0.28	+1.3
3,751,922	-		SO3585	0.28	+0.4
3,751,928	+		SO3585	0.29	-0.4
3,751,930	-		SO3585	0.29	-1.5
3,751,998	-		SO3585	0.40	+0.1
3,752,017	-		SO3585	0.43	+0.5
3,752,063	+		SO3585	0.51	+0.6
3,752,063	+		SO3585	0.51	+0.5
3,752,081	-		SO3585	0.53	+0.4
3,752,217	-		SO3585	0.76	-0.5
3,752,286	+		SO3585	0.87	+0.2
3,752,294	-		SO3585	0.88	-0.1
3,752,327	+				+0.0
3,752,431	-				-0.3
3,752,431	-				-0.8
3,752,447	+				+0.3
3,752,455	-		SO3586	0.12	-0.9
3,752,475	+		SO3586	0.17	+0.1
3,752,518	+		SO3586	0.27	-0.1
3,752,520	-		SO3586	0.27	+1.3
3,752,592	+		SO3586	0.45	-0.8