Strain Fitness in Shewanella oneidensis MR-1 around SO3356

Experiment: Gentamicin 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Gentamicin 0.005 mg/ml
3,498,457	-	proC	SO3354	0.56	-3.3
3,498,590	+	proC	SO3354	0.72	-1.3
3,498,696	+	proC	SO3354	0.85	-0.9
3,498,696	+	proC	SO3354	0.85	-1.3
3,498,704	-	proC	SO3354	0.86	-3.6
3,498,711	-	proC	SO3354	0.87	-5.1
3,498,716	+	proC	SO3354	0.87	+0.7
3,498,920	-				-2.4
3,498,972	+		SO3355	0.14	-1.4
3,499,044	+		SO3355	0.27	-5.3
3,499,044	+		SO3355	0.27	-4.5
3,499,054	+		SO3355	0.29	-3.6
3,499,139	-		SO3355	0.44	-3.7
3,499,266	-		SO3355	0.67	-3.8
3,499,323	+		SO3355	0.78	-3.4
3,499,447	-				-0.5
3,499,447	-				-0.0
3,499,542	+		SO3356	0.33	+0.6
3,499,693	+		SO3356	0.85	-0.1
3,499,701	-		SO3356	0.88	+0.3
3,499,758	+				-0.9
3,499,845	-				+0.0
3,499,908	+		SO3357	0.24	-0.4
3,499,916	-		SO3357	0.26	-0.9
3,499,946	+		SO3357	0.33	+0.3
3,499,954	+		SO3357	0.35	-0.4
3,499,962	-		SO3357	0.37	-0.1
3,500,013	-		SO3357	0.48	+1.0
3,500,123	-		SO3357	0.74	+0.2
3,500,208	-				-0.4
3,500,428	+		SO3358	0.12	-0.2
3,500,436	-		SO3358	0.13	+2.0
3,500,600	+		SO3358	0.40	+0.7
3,500,600	+		SO3358	0.40	-0.2
3,500,608	-		SO3358	0.41	-0.2
3,500,666	-		SO3358	0.50	-1.3
3,500,668	+		SO3358	0.51	-0.4
3,500,668	+		SO3358	0.51	-0.8
3,500,668	+		SO3358	0.51	-1.4