Strain Fitness in Shewanella oneidensis MR-1 around SO3348

Experiment: Gentamicin 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Gentamicin 0.005 mg/ml
3,492,141	+		SO3346	0.19	-1.4
3,492,158	+		SO3346	0.22	+0.6
3,492,158	+		SO3346	0.22	-0.4
3,493,103	+				-0.8
3,493,175	+				-0.1
3,493,247	-	hemH-2	SO3348	0.14	-1.2
3,493,307	-	hemH-2	SO3348	0.20	+0.9
3,493,317	-	hemH-2	SO3348	0.21	-0.5
3,493,357	-	hemH-2	SO3348	0.25	+0.1
3,493,357	-	hemH-2	SO3348	0.25	+0.1
3,493,418	+	hemH-2	SO3348	0.31	-0.8
3,493,426	-	hemH-2	SO3348	0.32	-0.4
3,493,465	-	hemH-2	SO3348	0.36	-0.8
3,493,506	-	hemH-2	SO3348	0.40	-0.5
3,493,511	-	hemH-2	SO3348	0.41	+0.2
3,493,511	-	hemH-2	SO3348	0.41	-1.5
3,493,638	-	hemH-2	SO3348	0.54	+0.2
3,493,835	-	hemH-2	SO3348	0.74	-0.6
3,493,877	+	hemH-2	SO3348	0.78	-0.9
3,493,926	+	hemH-2	SO3348	0.83	-0.1
3,493,926	+	hemH-2	SO3348	0.83	-0.0
3,493,934	-	hemH-2	SO3348	0.84	-0.5
3,493,934	-	hemH-2	SO3348	0.84	-0.9
3,494,011	+				-0.6
3,494,042	+				-0.8
3,494,042	-				+0.1
3,494,049	+				-0.1
3,494,089	+				-0.3
3,494,208	+				-0.2
3,494,251	-		SO3349	0.16	-0.4
3,494,464	-		SO3349	0.56	-0.4
3,494,490	+		SO3349	0.61	+0.5
3,494,490	+		SO3349	0.61	-0.4
3,494,553	+		SO3349	0.73	-0.3
3,494,553	+		SO3349	0.73	+0.1
3,494,553	+		SO3349	0.73	-0.9
3,494,553	+		SO3349	0.73	-0.8
3,494,561	-		SO3349	0.74	+0.4
3,494,561	-		SO3349	0.74	+0.7
3,494,561	-		SO3349	0.74	+0.6
3,494,561	-		SO3349	0.74	+0.7
3,494,561	-		SO3349	0.74	+0.0
3,494,561	-		SO3349	0.74	+0.7
3,494,561	-		SO3349	0.74	-0.8
3,494,561	-		SO3349	0.74	-0.4
3,494,577	-		SO3349	0.77	-0.6
3,494,586	-		SO3349	0.79	-0.1
3,494,593	-		SO3349	0.80	+0.4
3,494,617	-		SO3349	0.85	+0.1
3,494,727	-				-1.5
3,494,741	-				+0.3
3,494,792	+				+0.8
3,494,815	-				-0.3
3,494,840	-				-0.3
3,494,845	+				+0.3
3,494,874	-				+0.4
3,494,885	-				-1.0
3,494,951	-				-0.4
3,495,005	+	pilU	SO3350	0.12	-0.5