Strain Fitness in Shewanella oneidensis MR-1 around SO3177

Experiment: Gentamicin 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Gentamicin 0.005 mg/ml
3,314,455	-		SO3176	0.16	-2.8
3,314,486	-		SO3176	0.19	-3.8
3,314,519	+		SO3176	0.21	-3.4
3,314,527	+		SO3176	0.22	-3.3
3,314,527	-		SO3176	0.22	-1.6
3,314,535	+		SO3176	0.23	-1.2
3,314,543	-		SO3176	0.24	-1.9
3,314,554	+		SO3176	0.25	-1.5
3,314,594	-		SO3176	0.28	-2.3
3,314,604	-		SO3176	0.29	-4.5
3,314,613	-		SO3176	0.30	-2.8
3,314,631	+		SO3176	0.31	-1.3
3,314,632	-		SO3176	0.32	-2.5
3,314,698	-		SO3176	0.37	-1.2
3,314,764	-		SO3176	0.43	-2.6
3,314,770	+		SO3176	0.44	-3.9
3,314,770	+		SO3176	0.44	-2.1
3,314,778	-		SO3176	0.45	-3.2
3,314,805	+		SO3176	0.47	-2.2
3,314,806	+		SO3176	0.47	-3.0
3,314,816	+		SO3176	0.48	-1.1
3,314,816	+		SO3176	0.48	-2.5
3,314,822	+		SO3176	0.48	-1.9
3,314,824	-		SO3176	0.49	-0.8
3,314,824	-		SO3176	0.49	-4.1
3,314,874	+		SO3176	0.53	-3.3
3,314,889	+		SO3176	0.54	-2.9
3,314,889	+		SO3176	0.54	-3.1
3,314,890	+		SO3176	0.55	-2.6
3,314,890	+		SO3176	0.55	-1.7
3,314,897	-		SO3176	0.55	-1.7
3,314,897	-		SO3176	0.55	-1.6
3,314,897	-		SO3176	0.55	-2.7
3,314,897	-		SO3176	0.55	-2.6
3,314,898	-		SO3176	0.55	-1.6
3,314,898	-		SO3176	0.55	-2.8
3,314,998	+		SO3176	0.64	-3.0
3,314,998	+		SO3176	0.64	-3.7
3,314,998	+		SO3176	0.64	-2.3
3,314,998	+		SO3176	0.64	-1.7
3,314,998	+		SO3176	0.64	-1.2
3,314,998	+		SO3176	0.64	-2.9
3,314,998	+		SO3176	0.64	-1.2
3,314,998	+		SO3176	0.64	-1.3
3,314,998	+		SO3176	0.64	-1.7
3,314,998	+		SO3176	0.64	-2.9
3,314,998	+		SO3176	0.64	-0.3
3,314,998	+		SO3176	0.64	-3.6
3,314,998	+		SO3176	0.64	-3.1
3,315,006	-		SO3176	0.65	-4.3
3,315,006	-		SO3176	0.65	-3.1
3,315,006	-		SO3176	0.65	-2.1
3,315,006	-		SO3176	0.65	-2.0
3,315,006	-		SO3176	0.65	-1.1
3,315,006	-		SO3176	0.65	-1.6
3,315,006	-		SO3176	0.65	-3.1
3,315,006	-				-0.8
3,315,006	-		SO3176	0.65	-2.0
3,315,006	-		SO3176	0.65	-2.4
3,315,006	-		SO3176	0.65	-2.7
3,315,006	-		SO3176	0.65	-0.6
3,315,006	-		SO3176	0.65	-2.1
3,315,025	+		SO3176	0.67	-3.1
3,315,025	+		SO3176	0.67	-2.1
3,315,025	+		SO3176	0.67	-1.2
3,315,033	-		SO3176	0.67	-3.8
3,315,055	-		SO3176	0.69	-1.3
3,315,066	+		SO3176	0.70	-2.2
3,315,092	+		SO3176	0.73	-1.1
3,315,102	+		SO3176	0.73	-1.1
3,315,102	+		SO3176	0.73	-2.0
3,315,102	+		SO3176	0.73	-1.6
3,315,102	+		SO3176	0.73	-2.8
3,315,102	+		SO3176	0.73	-2.9
3,315,102	+		SO3176	0.73	-2.9
3,315,102	+		SO3176	0.73	-3.2
3,315,110	-		SO3176	0.74	-4.0
3,315,110	-		SO3176	0.74	-2.1
3,315,110	-		SO3176	0.74	-2.8
3,315,110	-		SO3176	0.74	-0.8
3,315,110	-		SO3176	0.74	-2.9
3,315,110	-		SO3176	0.74	-2.7
3,315,110	-		SO3176	0.74	-3.6
3,315,110	-		SO3176	0.74	-1.1
3,315,110	-		SO3176	0.74	-2.4
3,315,110	-		SO3176	0.74	-3.3
3,315,110	-		SO3176	0.74	-1.9
3,315,110	-		SO3176	0.74	+0.2
3,315,110	-		SO3176	0.74	-1.6
3,315,110	-		SO3176	0.74	-1.8
3,315,110	-		SO3176	0.74	-1.8
3,315,110	-		SO3176	0.74	-2.9
3,315,110	-		SO3176	0.74	-0.9
3,315,110	-		SO3176	0.74	-1.1
3,315,110	-		SO3176	0.74	-1.3
3,315,110	-		SO3176	0.74	-2.3
3,315,110	-		SO3176	0.74	-3.8
3,315,110	-		SO3176	0.74	-2.0
3,315,133	+		SO3176	0.76	-2.9
3,315,192	+		SO3176	0.81	-2.7
3,315,200	-		SO3176	0.82	-3.3
3,315,205	+		SO3176	0.83	-3.0
3,315,205	+		SO3176	0.83	-2.1
3,315,205	+		SO3176	0.83	-3.3
3,315,205	+		SO3176	0.83	-2.5
3,315,207	+		SO3176	0.83	-3.8
3,315,207	+		SO3176	0.83	-1.4
3,315,213	-		SO3176	0.83	-1.8
3,315,215	-		SO3176	0.84	-2.1
3,315,215	-		SO3176	0.84	-0.6
3,315,217	+		SO3176	0.84	-3.1
3,315,217	+		SO3176	0.84	-0.9
3,315,217	+		SO3176	0.84	-2.3
3,315,217	+		SO3176	0.84	-2.9
3,315,224	+		SO3176	0.84	-3.5
3,315,224	+		SO3176	0.84	-2.5
3,315,225	-		SO3176	0.84	-2.7
3,315,225	-		SO3176	0.84	-2.7
3,315,225	-		SO3176	0.84	-3.1
3,315,225	-		SO3176	0.84	-1.6
3,315,225	-		SO3176	0.84	-1.3
3,315,232	-		SO3176	0.85	-1.6
3,315,232	-		SO3176	0.85	-1.4
3,315,237	+		SO3176	0.85	-2.9
3,315,237	+		SO3176	0.85	-2.6
3,315,237	+		SO3176	0.85	-1.6
3,315,237	-		SO3176	0.85	-2.3
3,315,245	-		SO3176	0.86	-3.0
3,315,245	-		SO3176	0.86	-3.8
3,315,246	+		SO3176	0.86	-1.3
3,315,250	+		SO3176	0.87	-0.3
3,315,253	+		SO3176	0.87	-2.1
3,315,253	+		SO3176	0.87	-1.4
3,315,253	+		SO3176	0.87	-3.8
3,315,258	-		SO3176	0.87	-2.7
3,315,259	-		SO3176	0.87	-2.2
3,315,261	-		SO3176	0.88	-0.3
3,315,261	-		SO3176	0.88	-1.9
3,315,261	-		SO3176	0.88	-0.5
3,315,261	-		SO3176	0.88	-2.3
3,315,261	-		SO3176	0.88	-1.8
3,315,261	-		SO3176	0.88	-1.8
3,315,272	-		SO3176	0.89	-2.8
3,315,282	-		SO3176	0.89	-2.6
3,315,282	-		SO3176	0.89	-2.2
3,315,314	+				-3.7
3,315,314	+				-3.0
3,315,314	+				-1.8
3,315,324	+				-3.0
3,315,366	-				-3.3
3,315,387	+				-2.2
3,315,395	-				-3.5
3,315,469	+				-0.9
3,315,482	-				-1.2
3,315,483	-				-0.7
3,315,490	+				-1.9
3,315,501	+				-1.4
3,315,509	-		SO3177	0.10	-0.8
3,315,509	-		SO3177	0.10	-1.7
3,315,509	-		SO3177	0.10	-0.9
3,315,509	-		SO3177	0.10	-0.7
3,315,509	-		SO3177	0.10	+0.6
3,315,509	-		SO3177	0.10	-0.1
3,315,532	+		SO3177	0.13	-1.5
3,315,593	+		SO3177	0.21	-2.1
3,315,593	+		SO3177	0.21	-1.5
3,315,593	+		SO3177	0.21	-4.4
3,315,593	+		SO3177	0.21	-1.5
3,315,594	-		SO3177	0.22	-1.2
3,315,600	+		SO3177	0.22	-3.3
3,315,600	+		SO3177	0.22	+0.2
3,315,601	-		SO3177	0.22	-2.4
3,315,601	-		SO3177	0.22	-1.1
3,315,601	-		SO3177	0.22	-1.0
3,315,601	-		SO3177	0.22	-1.8
3,315,601	-		SO3177	0.22	-0.9
3,315,601	-		SO3177	0.22	-1.3
3,315,607	+		SO3177	0.23	-1.8
3,315,608	-		SO3177	0.23	-1.0
3,315,608	-		SO3177	0.23	-1.6
3,315,608	-		SO3177	0.23	-2.5
3,315,620	-		SO3177	0.25	-1.1
3,315,624	+		SO3177	0.25	-0.8
3,315,632	-		SO3177	0.27	-1.6
3,315,632	-		SO3177	0.27	-1.4
3,315,655	-		SO3177	0.30	-2.3
3,315,658	+		SO3177	0.30	-2.5
3,315,658	+		SO3177	0.30	-2.6
3,315,658	+		SO3177	0.30	-1.7
3,315,658	+		SO3177	0.30	-2.9
3,315,658	+		SO3177	0.30	-2.3
3,315,661	-		SO3177	0.30	-1.0
3,315,661	-		SO3177	0.30	-1.6
3,315,661	-		SO3177	0.30	-2.0
3,315,661	-		SO3177	0.30	-1.1
3,315,665	-		SO3177	0.31	-1.2
3,315,666	-		SO3177	0.31	-0.6
3,315,666	-		SO3177	0.31	-1.9
3,315,666	-		SO3177	0.31	-1.6
3,315,666	-		SO3177	0.31	-1.6
3,315,666	-		SO3177	0.31	-0.9
3,315,666	-		SO3177	0.31	-1.8
3,315,666	-		SO3177	0.31	-0.7
3,315,666	-		SO3177	0.31	-0.6
3,315,671	-		SO3177	0.32	-1.7
3,315,679	+		SO3177	0.33	-3.1
3,315,690	+		SO3177	0.34	-1.6
3,315,692	+		SO3177	0.34	-1.8
3,315,700	-		SO3177	0.35	-1.3
3,315,700	-		SO3177	0.35	-0.9
3,315,700	-		SO3177	0.35	-1.8
3,315,700	-		SO3177	0.35	-2.3
3,315,705	-		SO3177	0.36	-0.6
3,315,720	+		SO3177	0.38	-1.6
3,315,720	+		SO3177	0.38	-1.8
3,315,728	-		SO3177	0.39	-1.0
3,315,733	+		SO3177	0.40	-1.9
3,315,733	+		SO3177	0.40	-2.8
3,315,741	-		SO3177	0.41	-2.7
3,315,741	-		SO3177	0.41	-1.3
3,315,741	-		SO3177	0.41	-1.2
3,315,741	-		SO3177	0.41	-1.3
3,315,746	-		SO3177	0.41	-1.3
3,315,756	-		SO3177	0.43	+0.0
3,315,756	-		SO3177	0.43	-1.4
3,315,761	+		SO3177	0.43	-2.3
3,315,769	-		SO3177	0.44	-0.2
3,315,817	+		SO3177	0.51	-2.2
3,315,822	+		SO3177	0.51	-2.3
3,315,830	-		SO3177	0.52	-1.4
3,315,868	-		SO3177	0.57	-1.3
3,315,942	+		SO3177	0.67	-2.2
3,315,950	-		SO3177	0.68	-0.3
3,315,960	-		SO3177	0.70	-2.3
3,315,967	+		SO3177	0.70	-0.5
3,315,968	+		SO3177	0.71	-1.3
3,315,968	-		SO3177	0.71	-0.5
3,315,975	-		SO3177	0.72	-0.9
3,315,976	-		SO3177	0.72	-1.7
3,315,976	-		SO3177	0.72	-0.8
3,316,125	+				-2.2
3,316,125	+				-1.8
3,316,133	-				-1.3
3,316,133	-				-1.7
3,316,133	-				-2.5
3,316,135	+				+1.2
3,316,135	+				-1.1
3,316,135	+				-1.6
3,316,135	+				-1.3
3,316,135	+				-3.1
3,316,135	+				-1.9
3,316,135	+				-2.1
3,316,135	+				-1.1
3,316,135	+				-0.8
3,316,135	+				-1.5
3,316,135	+				-3.1
3,316,143	-				-0.6
3,316,143	-				-0.6
3,316,143	-				+0.0
3,316,143	-				-2.4
3,316,143	-				-2.5
3,316,143	-				-2.1
3,316,143	-				+0.3
3,316,143	-				-2.2
3,316,143	-				-1.5
3,316,143	-				-0.8
3,316,143	-				-2.5
3,316,143	-				-1.3
3,316,143	-				-0.8
3,316,143	-				-1.8
3,316,143	-				-0.6
3,316,143	-				-1.3
3,316,143	-				-1.2
3,316,143	-				-1.5
3,316,222	+				-0.4
3,316,279	-				-0.1
3,316,281	-				-0.3
3,316,288	+		SO3178	0.11	-0.1
3,316,296	-		SO3178	0.11	-0.4
3,316,365	+		SO3178	0.19	-0.6
3,316,396	+		SO3178	0.22	+0.0
3,316,396	+		SO3178	0.22	+0.8
3,316,396	+		SO3178	0.22	-1.0
3,316,396	+		SO3178	0.22	-1.9
3,316,396	+		SO3178	0.22	-0.7
3,316,404	-		SO3178	0.22	-0.8
3,316,404	-		SO3178	0.22	-0.8
3,316,498	-		SO3178	0.32	-0.3
3,316,567	+		SO3178	0.39	-0.3
3,316,568	+		SO3178	0.39	-1.6
3,316,568	+		SO3178	0.39	+0.1
3,316,568	+		SO3178	0.39	-1.2
3,316,568	-		SO3178	0.39	+0.3
3,316,576	-		SO3178	0.40	-0.6
3,316,576	-		SO3178	0.40	+0.6
3,316,576	-		SO3178	0.40	-0.4
3,316,576	-		SO3178	0.40	+0.9
3,316,576	-		SO3178	0.40	+0.1
3,316,576	-		SO3178	0.40	-0.3
3,316,592	-		SO3178	0.42	-0.8
3,316,595	+		SO3178	0.42	-0.0
3,316,595	+		SO3178	0.42	-1.5
3,316,678	+		SO3178	0.51	-1.0
3,316,679	+		SO3178	0.51	+0.1
3,316,679	+		SO3178	0.51	+0.7
3,316,679	+		SO3178	0.51	-1.3
3,316,679	+		SO3178	0.51	-1.2
3,316,679	+		SO3178	0.51	-0.8
3,316,679	-		SO3178	0.51	-0.0
3,316,679	-		SO3178	0.51	-0.2
3,316,686	-		SO3178	0.51	-0.5
3,316,686	-		SO3178	0.51	-0.1
3,316,686	-		SO3178	0.51	-0.2
3,316,687	-		SO3178	0.51	+0.8
3,316,687	-		SO3178	0.51	+0.2
3,316,687	-		SO3178	0.51	-0.3
3,316,687	-		SO3178	0.51	+1.2
3,316,687	-		SO3178	0.51	-0.2
3,316,687	-		SO3178	0.51	-0.8
3,316,687	-		SO3178	0.51	-0.8
3,316,687	-		SO3178	0.51	+0.3
3,316,687	-		SO3178	0.51	+0.2
3,316,693	+		SO3178	0.52	-1.2
3,316,693	+		SO3178	0.52	-0.3
3,316,693	+		SO3178	0.52	-1.3
3,316,693	+		SO3178	0.52	-0.9
3,316,693	+		SO3178	0.52	-0.0
3,316,693	+		SO3178	0.52	-1.0
3,316,693	+		SO3178	0.52	+0.0
3,316,693	-		SO3178	0.52	+1.0
3,316,693	-		SO3178	0.52	+0.9
3,316,694	-		SO3178	0.52	+0.2
3,316,701	-		SO3178	0.53	+0.0
3,316,701	-		SO3178	0.53	+0.2
3,316,701	-		SO3178	0.53	-0.9
3,316,702	-		SO3178	0.53	-0.6
3,316,702	-		SO3178	0.53	-0.3
3,316,718	+		SO3178	0.55	-0.9
3,316,718	+		SO3178	0.55	-0.3
3,316,730	+		SO3178	0.56	-0.7
3,316,733	-		SO3178	0.56	+0.1
3,316,738	-		SO3178	0.57	+0.7
3,316,740	+		SO3178	0.57	-0.3
3,316,740	+		SO3178	0.57	-1.8
3,316,740	+		SO3178	0.57	-1.8
3,316,740	+		SO3178	0.57	-0.9
3,316,740	+		SO3178	0.57	-0.7
3,316,740	+		SO3178	0.57	+1.1
3,316,740	+		SO3178	0.57	-0.3
3,316,740	+		SO3178	0.57	-2.5
3,316,748	-		SO3178	0.58	-1.2
3,316,748	-		SO3178	0.58	-0.8
3,316,748	-		SO3178	0.58	+1.4
3,316,748	-		SO3178	0.58	-0.9
3,316,748	-		SO3178	0.58	-0.5
3,316,750	+		SO3178	0.58	+0.6
3,316,750	+		SO3178	0.58	-2.9
3,316,750	+		SO3178	0.58	+0.1
3,316,758	-		SO3178	0.59	+0.2
3,316,758	-		SO3178	0.59	+0.1
3,316,758	-		SO3178	0.59	+0.5
3,316,758	-		SO3178	0.59	+0.3
3,316,758	-		SO3178	0.59	+1.8
3,316,758	-		SO3178	0.59	+0.4
3,316,765	-		SO3178	0.59	-0.1
3,316,765	-		SO3178	0.59	-0.6
3,316,765	-		SO3178	0.59	+0.6
3,316,768	+		SO3178	0.60	-1.6
3,316,768	+		SO3178	0.60	+0.4
3,316,776	-		SO3178	0.61	-1.1
3,316,776	-		SO3178	0.61	+0.5
3,316,776	-		SO3178	0.61	-0.0
3,316,776	-		SO3178	0.61	-0.2
3,316,776	-		SO3178	0.61	+1.1
3,316,776	-		SO3178	0.61	-0.9
3,316,778	+		SO3178	0.61	+0.0
3,316,778	+		SO3178	0.61	-0.3
3,316,801	+		SO3178	0.63	-0.8
3,316,913	-		SO3178	0.75	+0.2
3,316,913	-		SO3178	0.75	-0.9
3,316,913	-		SO3178	0.75	-0.0
3,316,913	-		SO3178	0.75	+0.2
3,316,930	-		SO3178	0.76	+0.7
3,316,930	-		SO3178	0.76	+0.2
3,316,932	+		SO3178	0.76	-1.5
3,316,940	-		SO3178	0.77	-0.4
3,316,957	+		SO3178	0.79	-0.5
3,316,965	-		SO3178	0.80	+0.1
3,316,965	-		SO3178	0.80	+0.2
3,316,982	+		SO3178	0.82	-1.5
3,316,991	+		SO3178	0.83	-1.5
3,316,991	+		SO3178	0.83	-0.7
3,316,991	+		SO3178	0.83	-1.0
3,316,991	+		SO3178	0.83	-0.5
3,316,991	+		SO3178	0.83	-0.7
3,316,991	+		SO3178	0.83	+0.1
3,316,999	-		SO3178	0.83	-1.9
3,316,999	-		SO3178	0.83	-0.4
3,316,999	-		SO3178	0.83	-0.3
3,316,999	-		SO3178	0.83	+0.0
3,316,999	-		SO3178	0.83	-0.1
3,316,999	-		SO3178	0.83	+0.1
3,316,999	-		SO3178	0.83	-0.6
3,316,999	-		SO3178	0.83	-0.7
3,316,999	-		SO3178	0.83	-0.8
3,316,999	-		SO3178	0.83	+0.5
3,316,999	-		SO3178	0.83	+0.1
3,317,007	+		SO3178	0.84	-1.1
3,317,007	+		SO3178	0.84	+0.4
3,317,007	+		SO3178	0.84	-0.1
3,317,007	+		SO3178	0.84	-0.9
3,317,007	+		SO3178	0.84	-2.3
3,317,007	+		SO3178	0.84	-0.6
3,317,007	+		SO3178	0.84	+0.2
3,317,015	-		SO3178	0.85	-0.2
3,317,017	-		SO3178	0.85	+0.4
3,317,025	-		SO3178	0.86	+0.1
3,317,025	-		SO3178	0.86	-0.6
3,317,025	-		SO3178	0.86	-1.0
3,317,025	-		SO3178	0.86	-0.2
3,317,033	-		SO3178	0.87	-0.4
3,317,049	+		SO3178	0.88	+0.7
3,317,050	+		SO3178	0.89	-0.9
3,317,059	+		SO3178	0.89	-0.4
3,317,080	+				-0.1
3,317,082	+				+0.4
3,317,091	+				+0.8
3,317,099	-				-0.3
3,317,104	+				-2.0
3,317,106	+				-1.3
3,317,106	+				-0.9
3,317,106	+				-1.1
3,317,106	+				-0.3
3,317,106	+				+0.1
3,317,106	+				-0.2
3,317,114	-				-1.9
3,317,114	-				+0.4
3,317,114	-				+0.2
3,317,114	-				+0.1
3,317,114	-				-0.1
3,317,114	-				-0.1
3,317,114	-				+1.6
3,317,114	-				+0.2
3,317,114	-				-0.1
3,317,114	-				+0.2
3,317,114	-				+0.7
3,317,114	-				-0.7
3,317,114	-				+0.3
3,317,114	-				-0.1
3,317,114	-				+0.1
3,317,114	-				-0.7
3,317,143	-				-0.7
3,317,151	-				+0.0