Strain Fitness in Shewanella oneidensis MR-1 around SO3173

Experiment: Gentamicin 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Gentamicin 0.005 mg/ml
3,309,333	+		SO3171	0.88	-1.6
3,309,338	+		SO3171	0.89	-2.2
3,309,341	-		SO3171	0.89	-1.7
3,309,847	+		SO3172	0.28	-0.7
3,309,849	-		SO3172	0.28	-3.3
3,309,854	+		SO3172	0.29	-0.7
3,309,855	-		SO3172	0.29	-3.3
3,309,857	-		SO3172	0.30	-0.7
3,309,953	+		SO3172	0.47	-4.0
3,310,249	+				-2.3
3,310,328	+				-2.3
3,310,328	+				-1.7
3,310,336	-				-1.6
3,310,337	-				-1.0
3,310,338	-				-1.0
3,310,533	-		SO3173	0.30	-1.5
3,310,572	-		SO3173	0.35	-1.7
3,310,616	+		SO3173	0.39	-2.7
3,310,631	-		SO3173	0.41	-0.6
3,310,638	+		SO3173	0.42	-1.8
3,310,646	-		SO3173	0.42	-1.9
3,310,646	-		SO3173	0.42	-0.7
3,310,660	+		SO3173	0.44	-1.1
3,310,841	+		SO3173	0.63	-1.8
3,310,849	-		SO3173	0.64	-2.7
3,310,901	+		SO3173	0.70	-2.2
3,310,901	+		SO3173	0.70	-1.9
3,310,901	+		SO3173	0.70	-1.1
3,310,901	+		SO3173	0.70	-2.3
3,310,901	+		SO3173	0.70	+1.8
3,310,908	+		SO3173	0.71	-2.3
3,310,909	-		SO3173	0.71	-2.4
3,310,909	-		SO3173	0.71	-2.2
3,310,909	-		SO3173	0.71	-0.4
3,310,909	-		SO3173	0.71	-1.1
3,310,909	-		SO3173	0.71	-1.2
3,310,909	-		SO3173	0.71	-2.2
3,310,909	-		SO3173	0.71	-3.0
3,310,916	-		SO3173	0.72	-0.3
3,310,918	+		SO3173	0.72	-2.0
3,310,989	+		SO3173	0.79	-2.4
3,311,000	+		SO3173	0.81	-2.3
3,311,008	-		SO3173	0.81	-1.7
3,311,008	-		SO3173	0.81	-1.1
3,311,008	-				-0.1
3,311,008	-		SO3173	0.81	-1.3
3,311,008	-		SO3173	0.81	-0.9
3,311,010	+		SO3173	0.82	-2.2
3,311,023	-		SO3173	0.83	-0.9
3,311,077	+		SO3173	0.89	-3.1
3,311,142	+				-2.4
3,311,157	+				-2.3
3,311,176	+				-1.1
3,311,213	+				-0.1
3,311,215	-				+0.1
3,311,312	+				-2.3
3,311,313	-				-3.1
3,311,328	-				-2.5
3,311,346	-		SO3174	0.11	-2.2
3,311,386	-		SO3174	0.15	-2.6
3,311,409	-		SO3174	0.17	-0.8
3,311,422	+		SO3174	0.18	-3.2
3,311,422	+		SO3174	0.18	-2.5
3,311,422	+		SO3174	0.18	-3.6
3,311,422	+		SO3174	0.18	-2.1
3,311,430	-		SO3174	0.19	-2.2
3,311,432	-		SO3174	0.19	-2.5
3,311,438	-		SO3174	0.20	-0.7
3,311,457	-		SO3174	0.21	-2.2
3,311,457	-		SO3174	0.21	+0.9
3,311,471	+		SO3174	0.22	-2.3
3,311,479	-		SO3174	0.23	-3.3
3,311,484	+		SO3174	0.24	-3.6
3,311,535	-		SO3174	0.28	+1.8
3,311,642	+		SO3174	0.38	-3.4
3,311,642	-		SO3174	0.38	-2.7
3,311,642	-		SO3174	0.38	-2.1
3,311,650	-		SO3174	0.38	-2.0
3,311,659	-		SO3174	0.39	-4.0
3,311,666	-		SO3174	0.40	-2.3
3,311,676	-		SO3174	0.41	-0.6
3,311,693	-		SO3174	0.42	-1.8
3,311,693	-		SO3174	0.42	-2.0
3,311,749	-		SO3174	0.47	-1.6
3,311,761	+		SO3174	0.48	-1.8
3,311,761	-		SO3174	0.48	-0.7
3,311,769	+		SO3174	0.49	-1.1
3,311,777	-		SO3174	0.49	-0.8
3,311,777	-		SO3174	0.49	-1.8
3,311,787	+		SO3174	0.50	-2.4
3,311,787	+		SO3174	0.50	-3.8
3,311,787	+		SO3174	0.50	-1.6
3,311,795	-		SO3174	0.51	-3.0
3,311,795	-		SO3174	0.51	-3.7
3,311,795	-		SO3174	0.51	-3.2
3,311,795	-		SO3174	0.51	-2.5
3,311,815	+		SO3174	0.53	-2.5
3,311,817	-		SO3174	0.53	-1.6
3,311,817	-		SO3174	0.53	-2.5
3,311,838	-		SO3174	0.55	-3.4
3,311,838	-		SO3174	0.55	-1.3
3,311,852	+		SO3174	0.56	-2.7
3,311,861	-		SO3174	0.57	-2.3
3,311,870	+		SO3174	0.58	-4.0
3,311,876	+		SO3174	0.58	-2.8
3,311,876	+		SO3174	0.58	-1.9
3,311,884	-		SO3174	0.59	-2.5
3,311,884	-		SO3174	0.59	-3.0
3,311,890	-		SO3174	0.59	-2.7
3,311,905	+		SO3174	0.61	-0.0
3,311,931	+		SO3174	0.63	-3.2
3,311,963	-		SO3174	0.66	-2.1
3,312,021	+		SO3174	0.71	-1.9
3,312,029	-		SO3174	0.72	-3.5
3,312,033	+		SO3174	0.72	-2.5
3,312,033	+		SO3174	0.72	-1.3
3,312,033	+		SO3174	0.72	-0.3
3,312,033	+		SO3174	0.72	-2.1
3,312,033	+		SO3174	0.72	-2.8
3,312,041	-		SO3174	0.73	-1.8
3,312,046	+		SO3174	0.73	-4.0
3,312,046	+		SO3174	0.73	-2.8
3,312,054	-		SO3174	0.74	-1.6
3,312,054	-		SO3174	0.74	-0.8
3,312,069	+		SO3174	0.75	-2.1
3,312,136	-		SO3174	0.81	-1.6
3,312,136	-		SO3174	0.81	-1.8
3,312,137	-		SO3174	0.81	-1.0
3,312,180	-		SO3174	0.85	-1.2
3,312,180	-		SO3174	0.85	-2.5
3,312,180	-		SO3174	0.85	-2.7