Strain Fitness in Shewanella oneidensis MR-1 around SO3113

Experiment: Gentamicin 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Gentamicin 0.005 mg/ml
3,240,750	-	secD-2	SO3111	0.68	-0.7
3,240,751	-	secD-2	SO3111	0.68	+0.0
3,241,007	+	secD-2	SO3111	0.82	-1.3
3,241,153	+	secD-2	SO3111	0.90	-2.6
3,241,175	-				-1.1
3,241,196	-				-0.7
3,241,214	-				-1.0
3,241,342	+				-0.9
3,241,350	-				-1.9
3,241,350	-				-2.3
3,241,377	-				-2.2
3,241,651	-	yajC	SO3112	0.88	-2.7
3,241,651	-	yajC	SO3112	0.88	-4.0
3,241,913	-	tgt	SO3113	0.17	-2.8
3,242,050	+	tgt	SO3113	0.30	-2.5
3,242,071	+	tgt	SO3113	0.31	-3.2
3,242,236	-	tgt	SO3113	0.46	-2.3
3,242,286	-	tgt	SO3113	0.51	-1.4
3,242,320	+	tgt	SO3113	0.54	-3.7
3,242,345	+	tgt	SO3113	0.56	-1.4
3,242,364	+	tgt	SO3113	0.58	-1.9
3,242,427	+	tgt	SO3113	0.63	-3.8
3,242,663	-	tgt	SO3113	0.84	-2.5
3,242,669	+	tgt	SO3113	0.85	-3.5
3,242,669	+	tgt	SO3113	0.85	-4.1
3,242,677	-	tgt	SO3113	0.85	-1.1
3,242,722	-	tgt	SO3113	0.89	-1.2
3,242,724	-	tgt	SO3113	0.90	+2.3
3,242,964	+				-1.4
3,242,964	+				-1.0
3,243,226	+	queA	SO3114	0.21	-0.2
3,243,226	+	queA	SO3114	0.21	-0.9
3,243,260	-	queA	SO3114	0.25	+1.9
3,243,353	+	queA	SO3114	0.34	-0.1
3,243,545	-	queA	SO3114	0.52	-0.3
3,243,568	-	queA	SO3114	0.54	+1.3
3,243,612	-	queA	SO3114	0.59	-0.3
3,243,627	-	queA	SO3114	0.60	-0.2
3,243,629	+	queA	SO3114	0.60	+0.6
3,243,751	-	queA	SO3114	0.72	-0.7
3,243,766	+	queA	SO3114	0.74	-0.3
3,243,825	-	queA	SO3114	0.79	+0.3