Strain Fitness in Shewanella oneidensis MR-1 around SO2712

Experiment: Gentamicin 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Gentamicin 0.005 mg/ml
2,829,298	-				+0.0
2,829,340	+		SO2711	0.12	+0.0
2,829,489	-		SO2711	0.29	-0.1
2,829,496	+		SO2711	0.29	+0.6
2,829,496	+		SO2711	0.29	+0.2
2,829,496	+		SO2711	0.29	+0.0
2,829,550	+		SO2711	0.36	+0.2
2,829,623	-		SO2711	0.44	+0.3
2,829,808	+		SO2711	0.65	+0.3
2,829,822	+		SO2711	0.67	+0.5
2,829,836	+		SO2711	0.68	+0.0
2,829,846	+		SO2711	0.70	-0.0
2,829,853	+		SO2711	0.70	+0.8
2,829,859	+		SO2711	0.71	-0.1
2,829,867	-		SO2711	0.72	+0.3
2,829,906	+		SO2711	0.76	-0.2
2,830,052	-				+0.4
2,830,087	-				+0.4
2,830,147	+				+0.1
2,830,239	-				-0.6
2,830,248	+				+0.1
2,830,308	+				-0.9
2,830,318	-				-0.4
2,830,325	+				-2.3
2,830,333	-				-0.2
2,830,333	-				-1.3
2,830,364	-		SO2712	0.11	-2.0
2,830,504	-		SO2712	0.23	-1.7
2,830,543	-		SO2712	0.26	-0.3
2,830,580	-		SO2712	0.30	-1.5
2,830,602	+		SO2712	0.31	-1.4
2,830,685	+		SO2712	0.39	-1.1
2,830,774	-		SO2712	0.47	-1.7
2,831,137	-		SO2712	0.78	-1.6
2,831,139	+		SO2712	0.79	-2.1
2,831,158	-		SO2712	0.80	-0.3
2,831,173	-		SO2712	0.82	-1.7
2,831,325	-				-0.8
2,831,325	-				-2.3
2,831,325	-				-0.1
2,831,325	-				-1.3
2,831,503	+				-0.7
2,831,503	+				-0.3
2,831,511	-				+0.9
2,831,756	-		SO2713	0.45	-0.8
2,831,756	-		SO2713	0.45	-1.7
2,831,777	-		SO2713	0.48	-1.4
2,831,825	+		SO2713	0.55	-1.0
2,831,833	+		SO2713	0.56	-1.3
2,831,833	-		SO2713	0.56	-1.2
2,831,833	-		SO2713	0.56	-3.0
2,831,947	+		SO2713	0.74	-1.0
2,831,955	-		SO2713	0.75	-0.8
2,832,091	-				-2.4
2,832,132	-				-0.7
2,832,178	+				-0.8
2,832,186	-				+0.4
2,832,196	-				-1.4
2,832,228	+				-1.1
2,832,250	+				-1.6
2,832,332	+		SO2714	0.36	-0.6
2,832,357	-		SO2714	0.45	+0.5