Strain Fitness in Shewanella oneidensis MR-1 around SO2593

Experiment: Gentamicin 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Gentamicin 0.005 mg/ml
2,719,919	-	pyrD	SO2592	0.13	-0.3
2,719,959	-	pyrD	SO2592	0.17	-0.4
2,719,995	+	pyrD	SO2592	0.20	-0.4
2,720,003	-	pyrD	SO2592	0.21	-1.3
2,720,009	+	pyrD	SO2592	0.21	-0.8
2,720,009	+	pyrD	SO2592	0.21	-0.7
2,720,017	-	pyrD	SO2592	0.22	-0.0
2,720,044	+	pyrD	SO2592	0.25	-1.1
2,720,044	+	pyrD	SO2592	0.25	-0.8
2,720,049	-	pyrD	SO2592	0.25	-1.1
2,720,052	-	pyrD	SO2592	0.26	-0.6
2,720,052	-	pyrD	SO2592	0.26	-0.3
2,720,052	-	pyrD	SO2592	0.26	-2.1
2,720,052	-	pyrD	SO2592	0.26	-0.2
2,720,052	-	pyrD	SO2592	0.26	-0.6
2,720,052	-	pyrD	SO2592	0.26	-0.7
2,720,060	+	pyrD	SO2592	0.26	+0.0
2,720,065	+	pyrD	SO2592	0.27	-1.1
2,720,065	+	pyrD	SO2592	0.27	-1.1
2,720,065	+	pyrD	SO2592	0.27	-0.8
2,720,065	+	pyrD	SO2592	0.27	+0.4
2,720,073	-	pyrD	SO2592	0.28	-1.2
2,720,073	-	pyrD	SO2592	0.28	-0.6
2,720,083	-	pyrD	SO2592	0.29	-0.1
2,720,222	-	pyrD	SO2592	0.42	-0.8
2,720,311	-	pyrD	SO2592	0.51	-1.1
2,720,318	+	pyrD	SO2592	0.52	-1.6
2,720,318	+	pyrD	SO2592	0.52	+0.7
2,720,326	-	pyrD	SO2592	0.53	-0.1
2,720,360	-	pyrD	SO2592	0.56	-1.7
2,720,362	+	pyrD	SO2592	0.56	-1.0
2,720,412	-	pyrD	SO2592	0.61	-0.9
2,720,522	+	pyrD	SO2592	0.72	-0.1
2,720,533	+	pyrD	SO2592	0.73	-0.9
2,720,545	+	pyrD	SO2592	0.74	-1.3
2,720,547	-	pyrD	SO2592	0.74	-0.9
2,721,006	-				-1.4
2,721,077	-				-1.7
2,721,115	-				+0.1
2,721,124	+				-2.2
2,721,132	-				-1.7
2,721,412	-		SO2593	0.11	+0.3
2,721,557	-		SO2593	0.14	-1.4
2,721,557	-		SO2593	0.14	-0.3
2,721,595	+		SO2593	0.15	-2.9
2,721,595	+		SO2593	0.15	-0.2
2,721,687	-		SO2593	0.17	-0.5
2,722,029	+		SO2593	0.24	-1.0
2,722,037	-		SO2593	0.24	-0.5
2,722,282	+		SO2593	0.29	+1.1
2,722,295	+		SO2593	0.29	-1.9
2,722,897	-		SO2593	0.42	-0.4
2,723,000	+		SO2593	0.44	-0.9
2,723,264	+		SO2593	0.49	-0.9
2,723,469	+		SO2593	0.54	-1.9
2,723,477	-		SO2593	0.54	-1.2
2,723,556	+		SO2593	0.55	-1.6
2,723,564	-		SO2593	0.56	-2.7
2,723,564	-		SO2593	0.56	-1.5
2,723,571	+		SO2593	0.56	-2.5
2,724,639	-		SO2593	0.78	-2.4
2,724,664	-		SO2593	0.78	+0.6
2,724,779	-		SO2593	0.81	-2.5
2,724,804	-		SO2593	0.81	-0.2
2,724,917	+		SO2593	0.83	+0.6
2,724,963	+		SO2593	0.84	-2.0
2,725,130	-		SO2593	0.88	-2.4
2,725,469	-				-0.8
2,726,023	+				-0.2
2,726,132	-				-0.4
2,726,350	+		SO2594	0.16	-0.1
2,726,414	-		SO2594	0.19	-0.8
2,726,564	-		SO2594	0.25	+1.0
2,726,593	-		SO2594	0.26	-0.1