Strain Fitness in Shewanella oneidensis MR-1 around SO2572

Experiment: Gentamicin 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Gentamicin 0.005 mg/ml
2,701,792	+		SO2571	0.32	+0.2
2,701,914	-		SO2571	0.41	+0.1
2,701,918	+		SO2571	0.41	-0.1
2,701,918	+		SO2571	0.41	-1.7
2,702,061	-		SO2571	0.51	-1.6
2,702,159	+		SO2571	0.58	-0.6
2,702,159	+		SO2571	0.58	-0.2
2,702,252	+		SO2571	0.64	-1.1
2,702,340	-		SO2571	0.70	-1.1
2,702,507	+		SO2571	0.82	-0.3
2,702,589	+		SO2571	0.88	+0.7
2,702,658	+				-0.5
2,702,834	-				-0.1
2,703,056	-	ppiB-2	SO2572	0.55	-0.4
2,703,147	-	ppiB-2	SO2572	0.73	+0.5
2,703,199	+	ppiB-2	SO2572	0.83	-0.3
2,703,199	+	ppiB-2	SO2572	0.83	+0.1
2,703,199	+	ppiB-2	SO2572	0.83	+0.5
2,703,230	+	ppiB-2	SO2572	0.90	+0.3
2,703,309	-				-0.3
2,703,311	+				+0.4
2,703,316	+				-0.4
2,703,319	-				-0.0
2,703,319	-				+0.5
2,703,515	+		SO2573	0.11	+1.7
2,703,515	+		SO2573	0.11	-0.1
2,703,515	+		SO2573	0.11	-0.9
2,703,515	+		SO2573	0.11	+0.9
2,703,621	+		SO2573	0.35	-0.0
2,703,707	-		SO2573	0.54	+0.2
2,703,792	-		SO2573	0.73	-0.3
2,703,871	-				+0.7
2,703,973	+				-0.0
2,704,189	+				-0.6
2,704,197	-				+0.1
2,704,197	-				+1.1
2,704,197	-				+1.9
2,704,253	+				-2.4
2,704,253	+				-1.2