Strain Fitness in Shewanella oneidensis MR-1 around SO2041

Experiment: Gentamicin 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Gentamicin 0.005 mg/ml
2,137,493	+		SO2040	0.55	+0.4
2,137,534	-		SO2040	0.57	-0.4
2,137,735	-		SO2040	0.68	-0.9
2,137,782	+		SO2040	0.70	+0.6
2,137,815	+		SO2040	0.72	+1.1
2,137,835	+		SO2040	0.73	-0.5
2,137,847	+		SO2040	0.74	-1.7
2,138,209	-				+0.4
2,138,323	+				+0.2
2,138,437	+				+0.1
2,138,447	-				-0.1
2,138,545	+				-0.2
2,138,704	-		SO2041	0.17	+0.1
2,138,720	-		SO2041	0.18	-0.2
2,138,798	+		SO2041	0.23	-1.2
2,138,852	-		SO2041	0.27	+0.0
2,138,854	+		SO2041	0.27	-1.6
2,138,861	+		SO2041	0.27	-1.0
2,138,892	-		SO2041	0.29	-0.5
2,139,022	+		SO2041	0.37	-0.7
2,139,194	-		SO2041	0.48	-0.3
2,139,194	-		SO2041	0.48	-0.5
2,139,382	+		SO2041	0.59	-1.9
2,139,448	+		SO2041	0.64	-1.8
2,139,591	-		SO2041	0.72	-0.2
2,139,591	-		SO2041	0.72	+0.3
2,139,696	-		SO2041	0.79	-0.5
2,139,766	-		SO2041	0.83	-0.8
2,139,773	-		SO2041	0.84	-0.1
2,139,858	+		SO2041	0.89	-1.0
2,139,911	-				-1.0
2,139,960	+				-0.8
2,140,200	+				-0.8
2,140,226	+				-0.4
2,140,349	+				+0.2
2,140,354	+				-0.3
2,140,368	+				+0.7
2,140,394	-				-0.1
2,140,415	-		SO2042	0.11	-0.2
2,140,416	-		SO2042	0.11	-0.0
2,140,416	-		SO2042	0.11	-0.6
2,140,491	+		SO2042	0.18	-0.5
2,140,516	+		SO2042	0.21	-0.0
2,140,524	-		SO2042	0.22	-0.7
2,140,557	+		SO2042	0.25	+0.4
2,140,623	+		SO2042	0.31	-0.7
2,140,637	+		SO2042	0.33	+0.3
2,140,647	+		SO2042	0.34	-0.3
2,140,647	+		SO2042	0.34	+0.3
2,140,647	+		SO2042	0.34	+0.1
2,140,647	+		SO2042	0.34	-0.7
2,140,655	-		SO2042	0.34	+0.1
2,140,655	-		SO2042	0.34	+0.9
2,140,731	+		SO2042	0.42	-0.9
2,140,774	-		SO2042	0.46	-0.4
2,140,940	+		SO2042	0.62	+0.2
2,140,994	-		SO2042	0.67	+0.3
2,141,032	+		SO2042	0.71	-0.2