Strain Fitness in Shewanella oneidensis MR-1 around SO1090

Experiment: Gentamicin 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Gentamicin 0.005 mg/ml
1,127,568	-		SO1087	0.88	-0.3
1,127,606	+				-0.9
1,127,608	-				-0.1
1,127,614	-				+0.1
1,127,706	+				-0.8
1,127,706	+				-0.5
1,127,714	-				+1.3
1,127,714	-				+0.6
1,127,714	-				+0.5
1,127,714	-				+0.0
1,127,714	-				-0.8
1,127,714	-				-0.5
1,127,716	+				-0.7
1,128,032	-				-0.1
1,128,032	-				+0.0
1,128,032	-				-0.5
1,128,440	-				+0.3
1,128,511	+				+0.3
1,128,750	-		SO1090	0.24	+0.3
1,128,765	+		SO1090	0.26	-0.8
1,128,765	-		SO1090	0.26	-0.0
1,128,767	-		SO1090	0.26	+0.3
1,128,780	+		SO1090	0.28	+1.3
1,128,780	+		SO1090	0.28	+0.7
1,128,780	+				+1.7
1,128,780	+		SO1090	0.28	+0.6
1,128,780	+		SO1090	0.28	-0.2
1,128,788	-		SO1090	0.29	-2.9
1,128,788	-		SO1090	0.29	+0.7
1,128,788	-		SO1090	0.29	+0.5
1,128,788	-		SO1090	0.29	-1.1
1,128,788	-		SO1090	0.29	+0.5
1,128,788	-		SO1090	0.29	+0.6
1,128,788	-		SO1090	0.29	+0.4
1,128,788	-		SO1090	0.29	-0.1
1,128,788	-		SO1090	0.29	-0.8
1,128,788	-		SO1090	0.29	-0.4
1,128,788	-		SO1090	0.29	+0.5
1,128,788	-		SO1090	0.29	+0.7
1,128,788	-		SO1090	0.29	+0.0
1,128,788	-		SO1090	0.29	+0.5
1,128,788	-		SO1090	0.29	+0.5
1,128,812	+		SO1090	0.31	+0.2
1,128,818	+		SO1090	0.32	+1.0
1,128,989	+		SO1090	0.53	+1.5
1,128,989	+		SO1090	0.53	+0.3
1,128,997	-		SO1090	0.53	+0.9
1,128,997	-		SO1090	0.53	+1.7
1,128,997	-		SO1090	0.53	-0.7
1,128,997	-		SO1090	0.53	+0.2
1,129,003	-		SO1090	0.54	-0.5
1,129,003	-		SO1090	0.54	-0.0
1,129,184	+		SO1090	0.76	-0.0
1,129,198	-		SO1090	0.77	-0.3
1,129,213	-		SO1090	0.79	-0.2
1,129,213	-		SO1090	0.79	-0.4
1,129,242	+		SO1090	0.83	-0.0
1,129,264	+		SO1090	0.85	+0.3
1,129,309	+				+0.4
1,129,309	+				-0.9
1,129,317	-				+1.0
1,129,418	+				+0.1
1,129,420	+				+0.1
1,129,463	-				+0.7
1,129,506	-				-0.9
1,129,521	-				-0.7
1,129,589	-				+0.3
1,129,610	-				+0.1
1,129,618	+				+0.1
1,129,659	+				+0.0
1,129,672	-				-0.4
1,129,691	-		SO1091	0.11	-0.5
1,129,701	-		SO1091	0.12	-0.1
1,129,826	+		SO1091	0.26	-0.8
1,129,909	-		SO1091	0.36	-0.8
1,129,986	+		SO1091	0.44	+1.2
1,129,994	-		SO1091	0.45	+0.2
1,129,994	-		SO1091	0.45	+0.5
1,129,994	-		SO1091	0.45	+0.3
1,129,994	-		SO1091	0.45	+0.6
1,130,008	+		SO1091	0.47	+1.3
1,130,036	+		SO1091	0.50	-0.5
1,130,058	+		SO1091	0.53	+0.4
1,130,102	+		SO1091	0.57	+0.6
1,130,110	-		SO1091	0.58	-0.2
1,130,135	+		SO1091	0.61	+0.7
1,130,143	-		SO1091	0.62	+1.0
1,130,188	-		SO1091	0.67	+1.5
1,130,193	+		SO1091	0.68	-0.2
1,130,261	+		SO1091	0.75	+0.6
1,130,269	-		SO1091	0.76	-0.3
1,130,269	-		SO1091	0.76	-0.4
1,130,271	+		SO1091	0.76	+0.1
1,130,279	-		SO1091	0.77	-0.5
1,130,279	-		SO1091	0.77	+0.7
1,130,279	-		SO1091	0.77	-1.0
1,130,279	-		SO1091	0.77	-0.2
1,130,329	+		SO1091	0.83	-0.3