Experiment: Gentamicin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0685 and SO0686 are separated by 118 nucleotides SO0686 and SO0687 overlap by 8 nucleotides SO0687 and SO0688 overlap by 4 nucleotides SO0688 and SO0689 overlap by 4 nucleotides SO0689 and SO0690 are separated by 142 nucleotides
SO0685: SO0685 - ISSod1, transposase OrfA (NCBI ptt file), at 704,750 to 705,040
SO0685
SO0686: SO0686 - hypothetical protein (NCBI ptt file), at 705,159 to 705,623
SO0686
SO0687: SO0687 - hypothetical protein (NCBI ptt file), at 705,616 to 705,918
SO0687
SO0688: SO0688 - hypothetical protein (NCBI ptt file), at 705,915 to 707,714
SO0688
SO0689: SO0689 - hypothetical protein (NCBI ptt file), at 707,711 to 707,932
SO0689
SO0690: SO0690 - type II DNA modification methyltransferase, putative (NCBI ptt file), at 708,075 to 708,836
SO0690
Position (kb) 705
706
707
708 Strain fitness (log2 ratio) -1
0
1
2 at 705.093 kb on + strand at 705.093 kb on + strand at 705.093 kb on + strand at 705.093 kb on + strand at 705.093 kb on + strand at 705.093 kb on + strand at 705.093 kb on + strand at 705.110 kb on + strand at 705.110 kb on + strand at 705.110 kb on + strand at 705.116 kb on - strand at 705.116 kb on - strand at 705.116 kb on - strand at 705.118 kb on - strand at 705.213 kb on - strand, within SO0686 at 705.246 kb on + strand, within SO0686 at 705.257 kb on + strand, within SO0686 at 705.257 kb on + strand, within SO0686 at 705.265 kb on - strand, within SO0686 at 705.265 kb on - strand, within SO0686 at 705.265 kb on - strand, within SO0686 at 705.265 kb on - strand, within SO0686 at 705.467 kb on - strand, within SO0686 at 705.614 kb on - strand at 705.618 kb on + strand at 705.656 kb on - strand, within SO0687 at 705.678 kb on + strand, within SO0687 at 705.678 kb on + strand, within SO0687 at 705.678 kb on + strand, within SO0687 at 705.685 kb on + strand, within SO0687 at 705.685 kb on - strand, within SO0687 at 705.693 kb on - strand, within SO0687 at 705.695 kb on + strand, within SO0687 at 705.858 kb on + strand, within SO0687 at 705.866 kb on - strand, within SO0687 at 705.911 kb on + strand at 705.949 kb on + strand at 705.952 kb on - strand at 705.969 kb on + strand at 705.975 kb on - strand at 705.980 kb on - strand at 706.000 kb on - strand at 706.005 kb on - strand at 706.013 kb on - strand at 706.014 kb on - strand at 706.015 kb on - strand at 706.083 kb on - strand at 706.083 kb on - strand at 706.083 kb on - strand at 706.178 kb on + strand, within SO0688 at 706.208 kb on - strand, within SO0688 at 706.210 kb on + strand, within SO0688 at 706.234 kb on + strand, within SO0688 at 706.234 kb on + strand, within SO0688 at 706.242 kb on - strand, within SO0688 at 706.249 kb on + strand, within SO0688 at 706.251 kb on - strand, within SO0688 at 706.257 kb on + strand, within SO0688 at 706.257 kb on - strand, within SO0688 at 706.258 kb on - strand, within SO0688 at 706.391 kb on + strand, within SO0688 at 706.426 kb on - strand, within SO0688 at 706.426 kb on - strand, within SO0688 at 706.426 kb on - strand, within SO0688 at 706.588 kb on + strand, within SO0688 at 706.596 kb on - strand, within SO0688 at 706.596 kb on - strand, within SO0688 at 706.596 kb on - strand, within SO0688 at 706.642 kb on + strand, within SO0688 at 706.642 kb on + strand, within SO0688 at 706.642 kb on + strand, within SO0688 at 706.747 kb on - strand, within SO0688 at 706.854 kb on + strand, within SO0688 at 706.920 kb on - strand, within SO0688 at 706.953 kb on - strand, within SO0688 at 706.969 kb on + strand, within SO0688 at 706.969 kb on + strand, within SO0688 at 706.969 kb on + strand, within SO0688 at 706.977 kb on - strand, within SO0688 at 707.068 kb on - strand, within SO0688 at 707.068 kb on - strand, within SO0688 at 707.174 kb on + strand, within SO0688 at 707.185 kb on + strand, within SO0688 at 707.243 kb on + strand, within SO0688 at 707.353 kb on - strand, within SO0688 at 707.411 kb on + strand, within SO0688 at 707.435 kb on + strand, within SO0688 at 707.481 kb on - strand, within SO0688 at 707.486 kb on - strand, within SO0688 at 707.526 kb on - strand, within SO0688 at 707.526 kb on - strand, within SO0688 at 707.526 kb on - strand, within SO0688 at 707.591 kb on + strand at 707.591 kb on + strand at 707.591 kb on + strand at 707.591 kb on + strand at 707.591 kb on + strand at 707.597 kb on - strand at 707.599 kb on - strand at 707.599 kb on - strand at 707.599 kb on - strand at 707.599 kb on - strand at 707.599 kb on - strand at 707.599 kb on - strand at 707.599 kb on - strand at 707.623 kb on + strand at 707.639 kb on + strand at 707.646 kb on + strand at 707.646 kb on + strand at 707.651 kb on + strand at 707.726 kb on - strand at 707.746 kb on - strand, within SO0689 at 707.748 kb on - strand, within SO0689 at 707.774 kb on + strand, within SO0689 at 707.782 kb on - strand, within SO0689 at 707.804 kb on - strand, within SO0689 at 707.824 kb on - strand, within SO0689 at 707.983 kb on + strand at 707.991 kb on - strand at 707.991 kb on - strand at 707.991 kb on - strand at 707.991 kb on - strand at 708.002 kb on + strand at 708.002 kb on + strand at 708.010 kb on - strand at 708.010 kb on - strand at 708.110 kb on + strand at 708.150 kb on + strand at 708.160 kb on + strand, within SO0690 at 708.167 kb on + strand, within SO0690 at 708.170 kb on + strand, within SO0690 at 708.173 kb on + strand, within SO0690 at 708.212 kb on - strand, within SO0690 at 708.212 kb on - strand, within SO0690 at 708.254 kb on + strand, within SO0690 at 708.277 kb on + strand, within SO0690 at 708.299 kb on + strand, within SO0690 at 708.299 kb on + strand, within SO0690 at 708.309 kb on + strand, within SO0690 at 708.317 kb on - strand, within SO0690 at 708.319 kb on + strand, within SO0690 at 708.327 kb on - strand, within SO0690 at 708.327 kb on - strand, within SO0690 at 708.361 kb on - strand, within SO0690 at 708.361 kb on - strand, within SO0690 at 708.361 kb on - strand, within SO0690 at 708.361 kb on - strand, within SO0690 at 708.432 kb on + strand, within SO0690 at 708.461 kb on - strand, within SO0690 at 708.468 kb on + strand, within SO0690 at 708.468 kb on + strand, within SO0690 at 708.468 kb on + strand, within SO0690 at 708.476 kb on - strand, within SO0690 at 708.476 kb on - strand, within SO0690 at 708.497 kb on + strand, within SO0690 at 708.497 kb on + strand, within SO0690 at 708.559 kb on + strand, within SO0690 at 708.567 kb on - strand, within SO0690 at 708.567 kb on - strand, within SO0690 at 708.578 kb on + strand, within SO0690 at 708.580 kb on - strand, within SO0690 at 708.603 kb on - strand, within SO0690 at 708.624 kb on + strand, within SO0690 at 708.632 kb on - strand, within SO0690 at 708.638 kb on + strand, within SO0690 at 708.646 kb on - strand, within SO0690 at 708.682 kb on - strand, within SO0690 at 708.696 kb on + strand, within SO0690 at 708.714 kb on - strand, within SO0690 at 708.714 kb on - strand, within SO0690
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.005 mg/ml remove 705,093 + -0.0 705,093 + -0.1 705,093 + -0.3 705,093 + +0.1 705,093 + -1.1 705,093 + -0.6 705,093 + -0.5 705,110 + +0.3 705,110 + +0.3 705,110 + +0.5 705,116 - -0.5 705,116 - -0.5 705,116 - +2.4 705,118 - -0.2 705,213 - SO0686 0.12 -0.0 705,246 + SO0686 0.19 +0.9 705,257 + SO0686 0.21 +1.1 705,257 + SO0686 0.21 +0.3 705,265 - SO0686 0.23 +0.2 705,265 - SO0686 0.23 +0.1 705,265 - SO0686 0.23 +0.5 705,265 - SO0686 0.23 +0.2 705,467 - SO0686 0.66 +1.9 705,614 - -0.6 705,618 + -0.7 705,656 - SO0687 0.13 +0.7 705,678 + SO0687 0.20 -0.6 705,678 + SO0687 0.20 -0.4 705,678 + SO0687 0.20 -1.0 705,685 + SO0687 0.23 -0.3 705,685 - SO0687 0.23 +0.1 705,693 - SO0687 0.25 +0.3 705,695 + SO0687 0.26 -0.3 705,858 + SO0687 0.80 -0.9 705,866 - SO0687 0.83 -0.9 705,911 + -0.3 705,949 + +0.2 705,952 - +1.1 705,969 + -1.1 705,975 - -0.4 705,980 - -0.9 706,000 - -0.2 706,005 - +0.3 706,013 - -0.0 706,014 - +0.1 706,015 - +1.4 706,083 - +0.5 706,083 - -0.8 706,083 - +0.4 706,178 + SO0688 0.15 +0.1 706,208 - SO0688 0.16 +0.5 706,210 + SO0688 0.16 +0.2 706,234 + SO0688 0.18 -0.4 706,234 + SO0688 0.18 -0.5 706,242 - SO0688 0.18 -0.7 706,249 + SO0688 0.19 -0.8 706,251 - SO0688 0.19 -0.0 706,257 + SO0688 0.19 -0.6 706,257 - SO0688 0.19 +0.4 706,258 - SO0688 0.19 -0.9 706,391 + SO0688 0.26 -0.3 706,426 - SO0688 0.28 -1.4 706,426 - SO0688 0.28 -0.0 706,426 - SO0688 0.28 -1.0 706,588 + SO0688 0.37 -0.1 706,596 - SO0688 0.38 +0.2 706,596 - SO0688 0.38 +0.4 706,596 - SO0688 0.38 -0.4 706,642 + SO0688 0.40 -0.5 706,642 + SO0688 0.40 +0.2 706,642 + SO0688 0.40 +0.3 706,747 - SO0688 0.46 -0.2 706,854 + SO0688 0.52 -0.0 706,920 - SO0688 0.56 +0.0 706,953 - SO0688 0.58 -0.7 706,969 + SO0688 0.59 -0.8 706,969 + SO0688 0.59 +0.4 706,969 + SO0688 0.59 -0.4 706,977 - SO0688 0.59 -0.2 707,068 - SO0688 0.64 +0.4 707,068 - SO0688 0.64 -0.5 707,174 + SO0688 0.70 -0.7 707,185 + SO0688 0.71 -1.2 707,243 + SO0688 0.74 +0.4 707,353 - SO0688 0.80 +0.1 707,411 + SO0688 0.83 -0.1 707,435 + SO0688 0.84 +0.8 707,481 - SO0688 0.87 -0.1 707,486 - SO0688 0.87 -0.1 707,526 - SO0688 0.90 -0.2 707,526 - SO0688 0.90 -0.4 707,526 - SO0688 0.90 -0.3 707,591 + -0.3 707,591 + -0.6 707,591 + -0.2 707,591 + +0.2 707,591 + -0.1 707,597 - +0.4 707,599 - -0.4 707,599 - -0.7 707,599 - -0.3 707,599 - +0.2 707,599 - -0.3 707,599 - +0.5 707,599 - +0.2 707,623 + -0.8 707,639 + +0.2 707,646 + +0.2 707,646 + +0.7 707,651 + +0.3 707,726 - -0.4 707,746 - SO0689 0.16 -1.0 707,748 - SO0689 0.17 -0.6 707,774 + SO0689 0.28 -0.4 707,782 - SO0689 0.32 -0.5 707,804 - SO0689 0.42 -0.5 707,824 - SO0689 0.51 -0.0 707,983 + +0.4 707,991 - +0.6 707,991 - +0.1 707,991 - +1.2 707,991 - -0.3 708,002 + -0.8 708,002 + +0.6 708,010 - -1.3 708,010 - +0.4 708,110 + -0.2 708,150 + +2.4 708,160 + SO0690 0.11 -0.3 708,167 + SO0690 0.12 -0.3 708,170 + SO0690 0.12 +0.9 708,173 + SO0690 0.13 +0.3 708,212 - SO0690 0.18 -0.2 708,212 - SO0690 0.18 -0.4 708,254 + SO0690 0.23 -1.4 708,277 + SO0690 0.27 +0.0 708,299 + SO0690 0.29 +0.4 708,299 + SO0690 0.29 -0.2 708,309 + SO0690 0.31 +1.7 708,317 - SO0690 0.32 +0.3 708,319 + SO0690 0.32 -1.0 708,327 - SO0690 0.33 -0.3 708,327 - SO0690 0.33 -0.3 708,361 - SO0690 0.38 -0.4 708,361 - SO0690 0.38 +0.3 708,361 - SO0690 0.38 +1.9 708,361 - SO0690 0.38 -0.2 708,432 + SO0690 0.47 -0.4 708,461 - SO0690 0.51 -0.2 708,468 + SO0690 0.52 -0.3 708,468 + SO0690 0.52 -1.0 708,468 + SO0690 0.52 +0.1 708,476 - SO0690 0.53 +0.7 708,476 - SO0690 0.53 +0.3 708,497 + SO0690 0.55 -0.8 708,497 + SO0690 0.55 +0.0 708,559 + SO0690 0.64 -1.1 708,567 - SO0690 0.65 -0.5 708,567 - SO0690 0.65 -0.4 708,578 + SO0690 0.66 +1.6 708,580 - SO0690 0.66 -0.1 708,603 - SO0690 0.69 -0.1 708,624 + SO0690 0.72 +0.4 708,632 - SO0690 0.73 +0.5 708,638 + SO0690 0.74 +0.6 708,646 - SO0690 0.75 -0.3 708,682 - SO0690 0.80 +0.1 708,696 + SO0690 0.81 +1.5 708,714 - SO0690 0.84 +1.1 708,714 - SO0690 0.84 +0.2
Or see this region's nucleotide sequence