Experiment: Gentamicin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0350 and SO0351 are separated by 16 nucleotides SO0351 and SO0352 overlap by 1 nucleotides SO0352 and SO0353 are separated by 87 nucleotides SO0353 and SO0354 are separated by 185 nucleotides
SO0350: SO0350 - hypothetical protein (NCBI ptt file), at 357,446 to 358,561
SO0350
SO0351: SO0351 - DNA-binding response regulator, LuxR family (NCBI ptt file), at 358,578 to 359,174
SO0351
SO0352: SO0352 - sensor histidine kinase, putative (NCBI ptt file), at 359,174 to 360,253
SO0352
SO0353: SO0353 - TPR domain protein (NCBI ptt file), at 360,341 to 361,039
SO0353
SO0354: SO0354 - sodium/calcium exchanger (NCBI ptt file), at 361,225 to 362,175
SO0354
Position (kb) 359
360
361 Strain fitness (log2 ratio) -2
-1
0
1 at 358.176 kb on - strand, within SO0350 at 358.323 kb on + strand, within SO0350 at 358.460 kb on - strand at 358.472 kb on + strand at 358.582 kb on + strand at 358.588 kb on + strand at 358.670 kb on - strand, within SO0351 at 358.933 kb on + strand, within SO0351 at 358.951 kb on - strand, within SO0351 at 358.978 kb on - strand, within SO0351 at 358.989 kb on + strand, within SO0351 at 358.997 kb on - strand, within SO0351 at 358.997 kb on - strand, within SO0351 at 359.033 kb on + strand, within SO0351 at 359.066 kb on - strand, within SO0351 at 359.066 kb on - strand, within SO0351 at 359.090 kb on - strand, within SO0351 at 359.120 kb on - strand at 359.145 kb on + strand at 359.171 kb on + strand at 359.179 kb on + strand at 359.197 kb on - strand at 359.201 kb on + strand at 359.214 kb on + strand at 359.247 kb on + strand at 359.247 kb on + strand at 359.292 kb on - strand, within SO0352 at 359.293 kb on - strand, within SO0352 at 359.341 kb on + strand, within SO0352 at 359.458 kb on - strand, within SO0352 at 359.479 kb on + strand, within SO0352 at 359.579 kb on + strand, within SO0352 at 359.617 kb on - strand, within SO0352 at 359.625 kb on - strand, within SO0352 at 359.707 kb on - strand, within SO0352 at 359.848 kb on + strand, within SO0352 at 359.856 kb on + strand, within SO0352 at 359.958 kb on - strand, within SO0352 at 359.966 kb on - strand, within SO0352 at 359.998 kb on - strand, within SO0352 at 360.017 kb on + strand, within SO0352 at 360.043 kb on - strand, within SO0352 at 360.165 kb on + strand at 360.480 kb on + strand, within SO0353 at 360.480 kb on + strand, within SO0353 at 360.480 kb on + strand, within SO0353 at 360.486 kb on + strand, within SO0353 at 360.487 kb on + strand, within SO0353 at 360.487 kb on + strand, within SO0353 at 360.488 kb on - strand, within SO0353 at 360.488 kb on - strand, within SO0353 at 360.513 kb on + strand, within SO0353 at 360.526 kb on - strand, within SO0353 at 360.596 kb on + strand, within SO0353 at 360.602 kb on - strand, within SO0353 at 360.670 kb on - strand, within SO0353 at 360.691 kb on + strand, within SO0353 at 360.691 kb on + strand, within SO0353 at 360.906 kb on - strand, within SO0353 at 361.004 kb on - strand at 361.014 kb on + strand at 361.024 kb on + strand at 361.030 kb on - strand at 361.030 kb on - strand at 361.116 kb on + strand at 361.202 kb on + strand at 361.203 kb on + strand at 361.211 kb on - strand at 361.211 kb on - strand at 361.228 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.005 mg/ml remove 358,176 - SO0350 0.65 +0.2 358,323 + SO0350 0.79 +0.0 358,460 - +0.4 358,472 + -0.6 358,582 + -0.3 358,588 + -0.1 358,670 - SO0351 0.15 -0.0 358,933 + SO0351 0.59 +1.1 358,951 - SO0351 0.62 -0.2 358,978 - SO0351 0.67 +0.5 358,989 + SO0351 0.69 +0.1 358,997 - SO0351 0.70 +0.1 358,997 - SO0351 0.70 -0.7 359,033 + SO0351 0.76 -0.7 359,066 - SO0351 0.82 +0.1 359,066 - SO0351 0.82 +0.2 359,090 - SO0351 0.86 -0.3 359,120 - -0.2 359,145 + -0.1 359,171 + -0.8 359,179 + +0.6 359,197 - -0.2 359,201 + +0.1 359,214 + +0.9 359,247 + -1.2 359,247 + +0.3 359,292 - SO0352 0.11 +0.3 359,293 - SO0352 0.11 +0.5 359,341 + SO0352 0.15 +0.3 359,458 - SO0352 0.26 -0.1 359,479 + SO0352 0.28 +0.4 359,579 + SO0352 0.38 +0.3 359,617 - SO0352 0.41 -1.9 359,625 - SO0352 0.42 -0.3 359,707 - SO0352 0.49 -0.0 359,848 + SO0352 0.62 +0.7 359,856 + SO0352 0.63 +0.2 359,958 - SO0352 0.73 -0.2 359,966 - SO0352 0.73 +0.2 359,998 - SO0352 0.76 -0.3 360,017 + SO0352 0.78 +0.9 360,043 - SO0352 0.80 +0.3 360,165 + +0.4 360,480 + SO0353 0.20 +1.1 360,480 + SO0353 0.20 +1.2 360,480 + SO0353 0.20 -0.9 360,486 + SO0353 0.21 +0.7 360,487 + SO0353 0.21 -0.4 360,487 + SO0353 0.21 +0.3 360,488 - SO0353 0.21 +0.2 360,488 - SO0353 0.21 +0.2 360,513 + SO0353 0.25 +0.0 360,526 - SO0353 0.26 -1.2 360,596 + SO0353 0.36 -0.5 360,602 - SO0353 0.37 -0.4 360,670 - SO0353 0.47 -0.8 360,691 + SO0353 0.50 -0.3 360,691 + SO0353 0.50 +0.7 360,906 - SO0353 0.81 -0.4 361,004 - +0.1 361,014 + +0.3 361,024 + +0.0 361,030 - +0.5 361,030 - +0.3 361,116 + +0.7 361,202 + +0.5 361,203 + -0.2 361,211 - +0.3 361,211 - -1.0 361,228 + +0.2
Or see this region's nucleotide sequence