Experiment: Gentamicin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0349 and SO0350 are separated by 216 nucleotides SO0350 and SO0351 are separated by 16 nucleotides SO0351 and SO0352 overlap by 1 nucleotides
SO0349: SO0349 - magnesium chelatase family protein (NCBI ptt file), at 355,703 to 357,229
SO0349
SO0350: SO0350 - hypothetical protein (NCBI ptt file), at 357,446 to 358,561
SO0350
SO0351: SO0351 - DNA-binding response regulator, LuxR family (NCBI ptt file), at 358,578 to 359,174
SO0351
SO0352: SO0352 - sensor histidine kinase, putative (NCBI ptt file), at 359,174 to 360,253
SO0352
Position (kb) 357
358
359 Strain fitness (log2 ratio) -1
0
1 at 356.474 kb on - strand, within SO0349 at 356.485 kb on + strand, within SO0349 at 356.493 kb on - strand, within SO0349 at 356.777 kb on - strand, within SO0349 at 356.782 kb on + strand, within SO0349 at 356.866 kb on + strand, within SO0349 at 356.882 kb on + strand, within SO0349 at 356.923 kb on + strand, within SO0349 at 356.930 kb on - strand, within SO0349 at 356.931 kb on - strand, within SO0349 at 356.931 kb on - strand, within SO0349 at 356.931 kb on - strand, within SO0349 at 357.152 kb on + strand at 357.161 kb on + strand at 357.163 kb on + strand at 357.192 kb on - strand at 357.341 kb on - strand at 357.425 kb on + strand at 357.433 kb on - strand at 357.511 kb on + strand at 357.560 kb on + strand, within SO0350 at 357.577 kb on - strand, within SO0350 at 357.632 kb on + strand, within SO0350 at 357.649 kb on + strand, within SO0350 at 357.649 kb on + strand, within SO0350 at 357.680 kb on - strand, within SO0350 at 357.680 kb on - strand, within SO0350 at 357.757 kb on + strand, within SO0350 at 357.763 kb on + strand, within SO0350 at 357.765 kb on - strand, within SO0350 at 357.910 kb on + strand, within SO0350 at 357.910 kb on + strand, within SO0350 at 357.910 kb on + strand, within SO0350 at 357.918 kb on - strand, within SO0350 at 357.972 kb on - strand, within SO0350 at 358.032 kb on - strand, within SO0350 at 358.176 kb on - strand, within SO0350 at 358.323 kb on + strand, within SO0350 at 358.460 kb on - strand at 358.472 kb on + strand at 358.582 kb on + strand at 358.588 kb on + strand at 358.670 kb on - strand, within SO0351 at 358.933 kb on + strand, within SO0351 at 358.951 kb on - strand, within SO0351 at 358.978 kb on - strand, within SO0351 at 358.989 kb on + strand, within SO0351 at 358.997 kb on - strand, within SO0351 at 358.997 kb on - strand, within SO0351 at 359.033 kb on + strand, within SO0351 at 359.066 kb on - strand, within SO0351 at 359.066 kb on - strand, within SO0351 at 359.090 kb on - strand, within SO0351 at 359.120 kb on - strand at 359.145 kb on + strand at 359.171 kb on + strand at 359.179 kb on + strand at 359.197 kb on - strand at 359.201 kb on + strand at 359.214 kb on + strand at 359.247 kb on + strand at 359.247 kb on + strand at 359.292 kb on - strand, within SO0352 at 359.293 kb on - strand, within SO0352 at 359.341 kb on + strand, within SO0352 at 359.458 kb on - strand, within SO0352 at 359.479 kb on + strand, within SO0352
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.005 mg/ml remove 356,474 - SO0349 0.50 -0.8 356,485 + SO0349 0.51 -0.1 356,493 - SO0349 0.52 -0.3 356,777 - SO0349 0.70 -0.2 356,782 + SO0349 0.71 -0.4 356,866 + SO0349 0.76 -0.2 356,882 + SO0349 0.77 +0.0 356,923 + SO0349 0.80 +0.7 356,930 - SO0349 0.80 -0.7 356,931 - SO0349 0.80 -0.6 356,931 - SO0349 0.80 -0.6 356,931 - SO0349 0.80 -0.4 357,152 + -0.1 357,161 + +0.3 357,163 + +0.1 357,192 - -0.9 357,341 - -0.5 357,425 + -0.1 357,433 - +0.0 357,511 + +0.8 357,560 + SO0350 0.10 +0.5 357,577 - SO0350 0.12 -0.1 357,632 + SO0350 0.17 +0.3 357,649 + SO0350 0.18 -0.7 357,649 + SO0350 0.18 +0.4 357,680 - SO0350 0.21 -0.1 357,680 - SO0350 0.21 +0.3 357,757 + SO0350 0.28 +0.4 357,763 + SO0350 0.28 +0.5 357,765 - SO0350 0.29 -0.7 357,910 + SO0350 0.42 -0.0 357,910 + SO0350 0.42 -0.0 357,910 + SO0350 0.42 -0.1 357,918 - SO0350 0.42 +0.1 357,972 - SO0350 0.47 +0.6 358,032 - SO0350 0.53 -0.1 358,176 - SO0350 0.65 +0.2 358,323 + SO0350 0.79 +0.0 358,460 - +0.4 358,472 + -0.6 358,582 + -0.3 358,588 + -0.1 358,670 - SO0351 0.15 -0.0 358,933 + SO0351 0.59 +1.1 358,951 - SO0351 0.62 -0.2 358,978 - SO0351 0.67 +0.5 358,989 + SO0351 0.69 +0.1 358,997 - SO0351 0.70 +0.1 358,997 - SO0351 0.70 -0.7 359,033 + SO0351 0.76 -0.7 359,066 - SO0351 0.82 +0.1 359,066 - SO0351 0.82 +0.2 359,090 - SO0351 0.86 -0.3 359,120 - -0.2 359,145 + -0.1 359,171 + -0.8 359,179 + +0.6 359,197 - -0.2 359,201 + +0.1 359,214 + +0.9 359,247 + -1.2 359,247 + +0.3 359,292 - SO0352 0.11 +0.3 359,293 - SO0352 0.11 +0.5 359,341 + SO0352 0.15 +0.3 359,458 - SO0352 0.26 -0.1 359,479 + SO0352 0.28 +0.4
Or see this region's nucleotide sequence