Strain Fitness in Shewanella oneidensis MR-1 around SO0053

Experiment: Gentamicin 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Gentamicin 0.005 mg/ml
57,695	+		SO0050	0.66	-1.4
57,728	+		SO0050	0.73	-3.9
57,811	+				-1.7
57,893	+		SO0051	0.72	-2.8
57,893	+		SO0051	0.72	-3.7
57,979	+				-3.3
57,979	+				-1.4
57,989	+				-0.6
58,027	+				-1.1
58,027	+				-2.2
58,027	+				-2.0
58,027	+				-1.4
59,635	+				-0.4
59,709	+				+0.3
59,709	+				+0.5
59,709	+				-0.7
59,796	+				-0.0
59,796	+				-0.0
59,804	-				+0.6
59,804	-				+0.2
59,804	-				-0.4
59,883	-				+1.6
59,945	+				+0.2
59,945	+				+0.2
59,953	-				-1.3
59,961	-				-0.4
59,961	-				+0.6
59,997	+				-0.3
59,997	+				+1.2
60,005	-				-1.4
60,005	-				+0.4
60,005	-				+0.1
60,010	-				-0.2
60,039	-				-0.3
60,039	-				+0.1
60,116	+		SO0054	0.14	+0.2
60,123	-		SO0054	0.15	+0.1
60,124	-		SO0054	0.15	-0.2
60,124	-		SO0054	0.15	-0.7
60,223	+		SO0054	0.23	-0.3
60,231	-		SO0054	0.24	+0.3
60,231	-		SO0054	0.24	-0.4
60,252	-		SO0054	0.25	+1.0
60,281	-		SO0054	0.28	-0.3
60,325	+		SO0054	0.32	-0.4
60,325	+		SO0054	0.32	-0.2
60,325	+		SO0054	0.32	-1.7
60,325	+		SO0054	0.32	+0.3
60,325	+		SO0054	0.32	-0.5
60,325	+		SO0054	0.32	+0.8
60,333	-		SO0054	0.32	+1.4
60,333	-		SO0054	0.32	-0.3
60,333	-		SO0054	0.32	-1.3
60,333	-		SO0054	0.32	+0.1
60,333	-		SO0054	0.32	+0.8
60,376	+		SO0054	0.36	-0.3
60,381	+		SO0054	0.36	+0.0
60,384	-		SO0054	0.37	-0.2
60,467	+		SO0054	0.43	-1.6
60,475	+		SO0054	0.44	+0.5
60,475	-		SO0054	0.44	+0.0
60,499	+		SO0054	0.46	-0.6
60,534	-		SO0054	0.49	-0.2
60,596	-		SO0054	0.54	-0.3